View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13802_high_10 (Length: 435)
Name: NF13802_high_10
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 14397785 - 14398190
Alignment:
| Q |
13 |
aatatattgtttcaatttgtacaggcagcacagttaagttatatgtatgtcattcttcataaacaagcttaatgttgtgattttgtacatattgttgata |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14397785 |
aatatattgtttcaatttgtacaggcagcacagttaagttatatgtatgtcattcttcataaacaagcttaatgttgtgattttgtacatattgttgata |
14397884 |
T |
|
| Q |
113 |
gctgcactgggtttgagtatgatgtcctattatgtagaatttttcttgataaggaagaattcttgttttggaagagaagcagaagcaaaactatgcatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14397885 |
gctgcactgggtttgagtatgatgtcctattatgtagaatttttcttgataaggaagaattcttgttttggaagagaagcagaagcaaaactatgcattt |
14397984 |
T |
|
| Q |
213 |
gaagggttcatggcgccatgaacaagaaaagttttcaaacatttgttcaatcagagtagcaaggttccgcaaaatgagtaagtattcgagtgtttatatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
14397985 |
gaagggttcatggcgccatgaacaagaaaagttttcaaacatttgttcaatcagagtagcaaggttctgcaaattgagtaagtattcgagtgtttatatt |
14398084 |
T |
|
| Q |
313 |
gcttaatgtttttactgtgtgatggactccaaaattgcatttaaacagatgcagaacacatacttccactagaggtcaattcttgtaactgatttcctct |
412 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14398085 |
gcttaatgtttttactgtgtgattgacaccaaaattgcatttaaacagatgcagaacacatacttccactagaggtcaattcttgtaactgatttcctct |
14398184 |
T |
|
| Q |
413 |
tactac |
418 |
Q |
| |
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|||||| |
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|
| T |
14398185 |
tactac |
14398190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 14391533 - 14391673
Alignment:
| Q |
13 |
aatatattgtttcaatttgtacaggcagcacagttaagttatatgtatgtcattcttcataaacaagcttaatgttgtgattttgtacatattgttgata |
112 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |
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| T |
14391533 |
aatatatagtttcaatttgtacaagcagcacagttaagttatatgtatgtcattcttcataaacaagcctaatgtagtgattttgtacatattgttgaca |
14391632 |
T |
|
| Q |
113 |
gctgcactgggtttgagtatgatgtcctattatgtagaatt |
153 |
Q |
| |
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||||| ||| |||||||||||| ||||||| ||||||||| |
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| T |
14391633 |
actgcattggatttgagtatgatatcctattctgtagaatt |
14391673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 300 - 418
Target Start/End: Original strand, 14391919 - 14392035
Alignment:
| Q |
300 |
gagtgtttatattgcttaatgtttttactgtgtgatggactccaaaattgcatttaaacagatgcagaacacatacttccactagaggtcaattcttgta |
399 |
Q |
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|
|||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||| ||| ||| |||||||||| ||| | |
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| T |
14391919 |
gagtgtttatattgcttaatgtttttactgtg--attgacaccaaaattgcattcaaacagatgcagaacacatgctttcacccgaggtcaattgttgca |
14392016 |
T |
|
| Q |
400 |
actgatttcctcttactac |
418 |
Q |
| |
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| ||||||||||||||||| |
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| T |
14392017 |
agtgatttcctcttactac |
14392035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 290 - 418
Target Start/End: Complemental strand, 13883504 - 13883374
Alignment:
| Q |
290 |
gtaagtattcgag--tgtttatattgcttaatgtttttactgtgtgatggactccaaaattgcatttaaacagatgcagaacacatacttccactagagg |
387 |
Q |
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|
||||||||||||| ||||||||||||| ||||||||||||||||| | ||| ||||| ||||||| ||||||||| ||||||||||||| ||||||| |
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| T |
13883504 |
gtaagtattcgagattgtttatattgctaaatgtttttactgtgtgcttgacaccaaacttgcattcaaacagatgaagaacacatactttgactagaga |
13883405 |
T |
|
| Q |
388 |
tcaattcttgtaactgatttcctcttactac |
418 |
Q |
| |
|
|||||| |||||| ||||||| |||| |||| |
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| T |
13883404 |
tcaattgttgtaattgatttcttcttgctac |
13883374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 14391742 - 14391868
Alignment:
| Q |
160 |
gataaggaagaa-ttcttgttttggaagagaagcagaagcaaaactatgcatctgaagggttcatggcgccatgaacaagaaaagttttcaaacatttgt |
258 |
Q |
| |
|
||||||||| || ||||||||||||| |||||||| ||| |||||||||||||||||| |||| ||||||||||||||| ||||| || ||||||| || |
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| T |
14391742 |
gataaggaaaaacttcttgttttggatgagaagcaaaagaaaaactatgcatctgaagagttcgtggcgccatgaacaatgaaagtcttaaaacattcgt |
14391841 |
T |
|
| Q |
259 |
tcaatcagagtagcaaggttccgcaaa |
285 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
14391842 |
tcagctagagtagcaaggttccgcaaa |
14391868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 13857681 - 13857619
Alignment:
| Q |
50 |
gttatatgtatgtcattcttcataaacaagcttaatgttgtgattttgtacatattgttgata |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||| |
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|
| T |
13857681 |
gttatatgtatgtcattcttcataaacaagcctaatgtcgtgattttgcacacattgttgata |
13857619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 13853027 - 13852932
Alignment:
| Q |
323 |
tttactgtgtgatggactccaaaattgcatttaaacagatgcagaacacatacttccactagaggtcaattcttgtaactgatttcctcttactac |
418 |
Q |
| |
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||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||| ||| | |||||| |||| |
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| T |
13853027 |
tttactgtgtgcatgacaccaaacttgcattcaaacagatgcagaacacatactttcactataggtcaattgttgtaattgaatacctcttgctac |
13852932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 16021816 - 16021700
Alignment:
| Q |
166 |
gaagaattcttgttttggaagagaagcagaagcaaaactatgcatctgaagggttcatggcgccatgaacaagaaaagttttcaaacatttgttcaatca |
265 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||| ||| | ||||||||||| ||||||| | |||||||| |||| |||||||||| |||||| || |
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| T |
16021816 |
gaagacttcttgtttcggactagaagcagaagaaaagcattgcatctgaagagttcatg---ctatgaacaacgaaagccttcaaacattcgttcaagca |
16021720 |
T |
|
| Q |
266 |
gagtagcaaggttccgcaaa |
285 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
16021719 |
gagtagcaaggttccgcaaa |
16021700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 14395709 - 14395762
Alignment:
| Q |
230 |
atgaacaagaaaagttttcaaacatttgttcaatcagagtagcaaggttccgca |
283 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| |||||| |||||||||||| |
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|
| T |
14395709 |
atgaccaagaaaagttttcaaacattcgttcaataagagtaccaaggttccgca |
14395762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 14389943 - 14390020
Alignment:
| Q |
68 |
ttcataaacaagcttaatgttgtgattttgtacatattgttgatagctgcactgggtttgagtatgatgtcctattatg |
146 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||| |||| ||||||| | || ||||||||| || ||||||| |
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|
| T |
14389943 |
ttcataaacaagcctaatgttgtgattttgcacatattgctgattcctgcact-gattagagtatgatttcttattatg |
14390020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 14358637 - 14358584
Alignment:
| Q |
59 |
atgtcattcttcataaacaagcttaatgttgtgattttgtacatattgttgata |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| | |||||| ||||| |
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|
| T |
14358637 |
atgtcattcttcataaacaagcctaatgttgtgcttttgcaaatattgctgata |
14358584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 277
Target Start/End: Complemental strand, 13856681 - 13856581
Alignment:
| Q |
174 |
cttgttttggaagagaagcagaagcaaaactatgcatctgaagggttcatggcgccatgaacaagaaaagttttcaaacatttgttcaatcagagtagca |
273 |
Q |
| |
|
||||||| ||| ||||||||||| ||| | |||||||||| ||||||| |||||||||| |||||| || || || | ||||||||||||||||| |
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| T |
13856681 |
cttgtttcggataagaagcagaagaaaagatttgcatctgaaatgttcatg---ccatgaacaataaaagtcttaaatcactcgttcaatcagagtagca |
13856585 |
T |
|
| Q |
274 |
aggt |
277 |
Q |
| |
|
|||| |
|
|
| T |
13856584 |
aggt |
13856581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 48707901 - 48707939
Alignment:
| Q |
240 |
aaagttttcaaacatttgttcaatcagagtagcaaggtt |
278 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
48707901 |
aaagtcttcaaacattcgttcaatcagagtagcaaggtt |
48707939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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