View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13802_high_11 (Length: 424)

Name: NF13802_high_11
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13802_high_11
NF13802_high_11
[»] chr7 (10 HSPs)
chr7 (10-256)||(41706269-41706515)
chr7 (283-333)||(41706560-41706610)
chr7 (369-405)||(32089322-32089358)
chr7 (369-405)||(32093079-32093115)
chr7 (369-405)||(32096795-32096831)
chr7 (369-405)||(39128549-39128585)
chr7 (369-405)||(39478460-39478496)
chr7 (369-405)||(41706686-41706722)
chr7 (369-405)||(41812164-41812200)
chr7 (369-405)||(32087967-32088003)
[»] chr3 (6 HSPs)
chr3 (370-405)||(50823393-50823428)
chr3 (370-405)||(50852433-50852468)
chr3 (369-405)||(38044578-38044614)
chr3 (369-405)||(48837990-48838026)
chr3 (369-404)||(50903990-50904025)
chr3 (372-405)||(147945-147978)
[»] chr1 (3 HSPs)
chr1 (371-405)||(6760097-6760131)
chr1 (369-405)||(31142005-31142041)
chr1 (369-405)||(34470029-34470065)
[»] chr8 (2 HSPs)
chr8 (369-405)||(21634863-21634899)
chr8 (369-405)||(10583099-10583135)
[»] chr6 (2 HSPs)
chr6 (369-405)||(26217291-26217327)
chr6 (369-405)||(7618987-7619023)
[»] chr5 (1 HSPs)
chr5 (373-405)||(17013887-17013919)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 41706269 - 41706515
Alignment:
Q  10 aagaatatgatttgacactatttaaaggttggaagnnnnnnnnctccacatacacaaacatctagttagtcaagattttgaatggcataaactttgtaac 109  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706269 aagaatatgatttgacactatttaaaggttggaagaaaaaaaactccacatacacaaacatctagttagtcaagattttgaatggcataaactttgtaac 41706368  T
Q  110 ataagacaaaggaaaacctggtcctagaatagaattagaatctgttttcaactcacttttccatgcttagaatctaatcctttaaggattgttttccact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706369 ataagacaaaggaaaacctggtcctagaatagaattagaatctgttttcaactcacttttccatgcttagaatctaatcctttaaggattgttttccact 41706468  T
Q  210 tctagctcagattgaccgacctgcatcaaatccatggtgctgcaata 256  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||    
T  41706469 tctagctcagattgacttacctgcatcaaatccatggtgctgcaata 41706515  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 41706560 - 41706610
Alignment:
Q  283 gaaataatctgatacattcagaattcatagtagctaatcagttattgaaat 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41706560 gaaataatctgatacattcagaattcatagtagctaatcagttattgaaat 41706610  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 32089322 - 32089358
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  32089322 tctgtatcgttccaattttatcggatgtccccgaagg 32089358  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 32093079 - 32093115
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  32093079 tctgtatcgttccaattttatcggatgtccccgaagg 32093115  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 32096795 - 32096831
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  32096795 tctgtatcgttccaattttatcggatgtccccgaagg 32096831  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 39128549 - 39128585
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  39128549 tctgtatcgttccaattttatcggatgtccccgaagg 39128585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 39478496 - 39478460
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  39478496 tctgtatcgttccaattttatcggatgtccccgaagg 39478460  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 41706686 - 41706722
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  41706686 tctgtatcgttccaattttatcggatgtccccgaagg 41706722  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 41812200 - 41812164
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  41812200 tctgtatcgttccaattttatcggatgtccccgaagg 41812164  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 32087967 - 32088003
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    |||||||||||||||||||||| |||||||| |||||    
T  32087967 tctgtatcgttccaattttatcagatgtccccgaagg 32088003  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 405
Target Start/End: Complemental strand, 50823428 - 50823393
Alignment:
Q  370 ctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||||||||    
T  50823428 ctgtatcgttccaattttatcggatgtccctgaagg 50823393  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 405
Target Start/End: Original strand, 50852433 - 50852468
Alignment:
Q  370 ctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||||||||    
T  50852433 ctgtatcgttccaattttatcggatgtccctgaagg 50852468  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 38044578 - 38044614
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  38044578 tctgtatcgttccaattttatcggatgtccccgaagg 38044614  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 48838026 - 48837990
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  48838026 tctgtatcgttccaattttatcggatgtccccgaagg 48837990  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 50904025 - 50903990
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaag 404  Q
    ||||||||||||||||||||||||||||||| ||||    
T  50904025 tctgtatcgttccaattttatcggatgtccccgaag 50903990  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 147978 - 147945
Alignment:
Q  372 gtatcgttccaattttatcggatgtccctgaagg 405  Q
    |||||||||||||||||||||||||||| |||||    
T  147978 gtatcgttccaattttatcggatgtccccgaagg 147945  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 6760131 - 6760097
Alignment:
Q  371 tgtatcgttccaattttatcggatgtccctgaagg 405  Q
    |||||||||||||||||||||||||||||||||||    
T  6760131 tgtatcgttccaattttatcggatgtccctgaagg 6760097  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 31142005 - 31142041
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  31142005 tctgtatcgttccaattttatcggatgtccccgaagg 31142041  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 34470065 - 34470029
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    |||||||| |||||||||||||||||||||| |||||    
T  34470065 tctgtatcattccaattttatcggatgtccccgaagg 34470029  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 21634863 - 21634899
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  21634863 tctgtatcgttccaattttatcggatgtccccgaagg 21634899  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 10583099 - 10583135
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  10583099 tctgtatcgtttcaattttatcggatgtccccgaagg 10583135  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 26217291 - 26217327
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    ||||||||||||||||||||||||||||||| |||||    
T  26217291 tctgtatcgttccaattttatcggatgtccccgaagg 26217327  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 7618987 - 7619023
Alignment:
Q  369 tctgtatcgttccaattttatcggatgtccctgaagg 405  Q
    |||||||| |||||||||||||||||||||| |||||    
T  7618987 tctgtatcattccaattttatcggatgtccccgaagg 7619023  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 17013919 - 17013887
Alignment:
Q  373 tatcgttccaattttatcggatgtccctgaagg 405  Q
    |||||||||||||||||||||||||||||||||    
T  17013919 tatcgttccaattttatcggatgtccctgaagg 17013887  T

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