View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13802_high_16 (Length: 355)
Name: NF13802_high_16
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_high_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 36178813 - 36178996
Alignment:
| Q |
20 |
gaagttgcaggacaatgaattaaagaagtcatcatcggatatgaaaaccgacttagttggaaaaaggaaagataattaagcactattgttttgttataac |
119 |
Q |
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| T |
36178813 |
gaagttgcaggacaatgaattaaagaagtcatcatcggatatgaaaaccgacttagttggaaaaaggaaagagaattaagcactattgttttgttataac |
36178912 |
T |
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| Q |
120 |
ttatgttgttatgaataagatgaaagagaagggtatctggctacgtatgttgggaggagatgctgggattggtgaatttgtctg |
203 |
Q |
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| T |
36178913 |
ttatgtttttatgaataagatgaaagagaagggtatctggctacgtatgttgggaggagatgctgggattgctgaatttgtctg |
36178996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 36179016 - 36179067
Alignment:
| Q |
238 |
gagagaggattagaacttgtgagttgtgagtggtagtagagtaacccacatc |
289 |
Q |
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| T |
36179016 |
gagagtggattagaacttgtgagttgtgagtggtagtagagtaacccacatc |
36179067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 41604458 - 41604501
Alignment:
| Q |
312 |
gtcattttctttgtcctccttttccataattcctaaactttcta |
355 |
Q |
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| T |
41604458 |
gtcattttctttggcctcctcttccataattcctaaactttcta |
41604501 |
T |
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