View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13802_high_22 (Length: 296)
Name: NF13802_high_22
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 20399479 - 20399743
Alignment:
| Q |
19 |
gagagtggaacaagttttagcccaattgatgaaccatagtaatggctacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaactt |
118 |
Q |
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| T |
20399479 |
gagagtggaacaagttttggcccaattgatgaaccatagtaatggctacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaactt |
20399578 |
T |
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| Q |
119 |
gattgaacttcattttgattagcttaagtatatgaagttgatgaggctgagtattgaccaatagggtcaatcatgctttttgctcattgaaaaaataata |
218 |
Q |
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| T |
20399579 |
gattgaacttcattttgattagcttaagtatatgaagttgatgaggctgagtattgaccaatagggtcaatcatgctttttgctcattgaaaaaataata |
20399678 |
T |
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| Q |
219 |
tattgagatnnnnnnnnnngtatttgaaaaacaatattgtccatatgaagtggtttatgacattcatctc |
288 |
Q |
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| T |
20399679 |
tattgata---aaaaaaaagtatttgaaaaaca--attgtccatatgaggtggtttatgacattcgtctc |
20399743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 20413401 - 20413581
Alignment:
| Q |
19 |
gagagtggaacaagttttagcccaattgatgaaccatagtaatggctacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaactt |
118 |
Q |
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| T |
20413401 |
gagagtggaacaagttttagcccaattgatgaaccatagtaatggctacgaatcacttcaaagatcttggagaccagcacttcagagcatccctgaagct |
20413500 |
T |
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| Q |
119 |
gattgaacttcattttgattagcttaagtatatgaagttgatgaggctgagtattgaccaatagggtcaatcatgcttttt |
199 |
Q |
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| T |
20413501 |
gattgagcttgaattagattagtttaggtatatgaagttgatgaagataagtattggcttattgggtcaatcttgcttttt |
20413581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 20390406 - 20390512
Alignment:
| Q |
19 |
gagagtggaacaagttttagcccaattgatgaaccatagtaatggctacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaactt |
118 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| || |
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| T |
20390406 |
gagagtggagcaagttttagcccaattgatgaaccatagtaatggctaccaatcacttcaaagatcttggagacctgcacttcaaagcatccctgaagtt |
20390505 |
T |
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| Q |
119 |
gattgaa |
125 |
Q |
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| T |
20390506 |
gattgaa |
20390512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 20380502 - 20380647
Alignment:
| Q |
29 |
caagttttagcccaattgatgaaccatagtaatggctacgaatcacttcagagatcttggagacctgcacttcagagcatccctgaacttgattgaactt |
128 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| | |||| | ||| |
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| T |
20380502 |
caagttttagcccaattgatgaaccatagcaatggctatcaatcacttcaaagatcttggagacctgcacttcaaagtatccctgaagtggattaagctt |
20380601 |
T |
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| Q |
129 |
cattttgattagcttaagtatatgaagttgatgaggctgagtattg |
174 |
Q |
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| T |
20380602 |
catttagattaatttaggtgtatgaagttgaggaagatgagtattg |
20380647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 20390509 - 20390580
Alignment:
| Q |
151 |
tgaagttgatgaggctgagtattgaccaatagggtcaatcatgctttttgctcattgaaaaaataatatatt |
222 |
Q |
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| T |
20390509 |
tgaagttgatgaagattagtattgaccagttgggtcaatcttgctttttgctctttgaaaaaaaaatatatt |
20390580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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