View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13802_high_23 (Length: 281)
Name: NF13802_high_23
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 41901432 - 41901164
Alignment:
| Q |
1 |
aaacaagctactatttgtttgggttcgtatactcgcttatgctgtaatatacataaaat---ttcctaacaactctattcgttaattaatgtgtttcata |
97 |
Q |
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| T |
41901432 |
aaacaagctactatttgtttgggttcgtatactcgcttatgctgttttatacataaaatcatttcctaataactctattcgttaattaatgtgtttcata |
41901333 |
T |
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| Q |
98 |
catttatattaggatcaagataaatgtagagattctggttttaaatccttggaaaacaacaagaagccccnnnnnnncaaggaactgaaagaagtgtggc |
197 |
Q |
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| T |
41901332 |
catttatattaggatcaagataaatgtagagattctggttttaaatccttggagaacaaccagaagcccctttttttcaaggaactgaaagaagtgtggc |
41901233 |
T |
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| Q |
198 |
acagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagt |
266 |
Q |
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| T |
41901232 |
acagtgtcaagaaaggaggaccgtattctgcttccaataccttgctaattgatgacaaaccatacaagt |
41901164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 91 - 266
Target Start/End: Complemental strand, 41896303 - 41896128
Alignment:
| Q |
91 |
tttcatacatttatattaggatcaagataaatgtagagattctggttttaaatccttggaaaacaacaagaagccccnnnnnnncaaggaactgaaagaa |
190 |
Q |
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||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| || | ||| ||||||||| || |
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| T |
41896303 |
tttcatatatttattttaggatcaacataaatgtagagattctggttttaaatccttggagaacaataagaaacctctctttttcaaagaactgaaaaaa |
41896204 |
T |
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| Q |
191 |
gtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagt |
266 |
Q |
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| T |
41896203 |
gtgtgggacactatcaagaaaggaggaccgtattctgcttcaaatacgttgctgatcgatgacaaaccatacaagt |
41896128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 34454209 - 34454271
Alignment:
| Q |
203 |
gtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaag |
265 |
Q |
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|||||||||||||| |||||||||||||| ||||| ||| | ||||||||||||||||||||| |
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| T |
34454209 |
gtcaagaaaggaggtccatattctgcttctaatactttgatgattgatgacaaaccatacaag |
34454271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 41891246 - 41891159
Alignment:
| Q |
176 |
aaggaactgaaagaagtgtggcacagtgtcaagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccataca |
263 |
Q |
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| T |
41891246 |
aaggaactaaaagaagtgtgggatgatgtcaagaaaggatgtccatattctgcttcaaataccttgatgattgatgccagaccataca |
41891159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 41885185 - 41885125
Alignment:
| Q |
206 |
aagaaaggaggaccatattctgcttccaataccttgctaattgatgacaaaccatacaagt |
266 |
Q |
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|||||| |||| |||||||||||||| ||||| ||| | |||||||||||| |||| |||| |
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| T |
41885185 |
aagaaaagaggcccatattctgcttctaatactttgatgattgatgacaaagcatataagt |
41885125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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