View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13802_high_3 (Length: 620)
Name: NF13802_high_3
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_high_3 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 620
Target Start/End: Original strand, 8930887 - 8931501
Alignment:
| Q |
11 |
gaacctgtggcaaatatgtgaatgagtttattacgaataaactaacagataaaatttaaagtttactagtttaaaagtgaatagttgaaccaattatatt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8930887 |
gaacctgtgacaaatatgtgaatgagtttattacgattaaactaacagataaaatttaaagtttactagtttaaaagtaaatagttgaaccaattatatt |
8930986 |
T |
|
| Q |
111 |
gcaacccaccaaagggcaagctgttagtttctataggagggtctgtacaccccatggcaagattctaaacccatcctcgcagggacgtgtcttaggccca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8930987 |
gcaacccaccaaagggcaagctgttagtttctataggagggtctgtacaccccatggcaagattctaaacccttcctcgcagggacgtgtcttaggccca |
8931086 |
T |
|
| Q |
211 |
accgtttgttatagctagggggcgactagggtgagggaggcgatagccctcgcagtacggtttagtggttttattgtaatctgaatcgtagtaactagta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931087 |
accgtttgttatagctagggggcgactagggtgagggaggcgatagccctcgcagtacggttcagtggttttattgtaatctgaatcgtagtaactagta |
8931186 |
T |
|
| Q |
311 |
atatatattgcttgtaaaactaacatgggttttaatgagtttcatccatggattcatatacggtaaagactagatctcaaacatggacaagcaaagatca |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8931187 |
atatatattgcttgtaaaactaacatgggttttaatgagttacatccatggattcatatacgggaaagactagatctcaaacatggagaagcaaagatca |
8931286 |
T |
|
| Q |
411 |
attacaagagaaccacgacgtttccccttgtaacaaaataaacatggaagatgatttttcttatgtac-nnnnnnnnngtaagagcatatatttttctta |
509 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
8931287 |
attacgagagaaccacgacgtttccccttataacaaaatatacatggaagatgatttttgttatgtacttttttttttgtaagagcatatatttttctta |
8931386 |
T |
|
| Q |
510 |
tc----tacttaaatcatgtgagtgatgataaaatcaacaatcatgcatggctattttttcacattgcgacaaattaaccagtgtttatcaatcatcata |
605 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931387 |
tctacttacttaaatcatgtgagtgatgataaaatcaacaatcatgcatggctattttttcacattgcgacaaattaaccagtgtttatcaatcatcata |
8931486 |
T |
|
| Q |
606 |
ctaaatgcttctcca |
620 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8931487 |
ctaaatgcttctcca |
8931501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University