View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13802_high_37 (Length: 226)

Name: NF13802_high_37
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13802_high_37
NF13802_high_37
[»] chr7 (5 HSPs)
chr7 (100-220)||(34197426-34197546)
chr7 (100-215)||(48216458-48216574)
chr7 (100-216)||(13550440-13550557)
chr7 (185-220)||(34193258-34193293)
chr7 (100-154)||(5803527-5803581)
[»] chr8 (5 HSPs)
chr8 (100-218)||(28505166-28505285)
chr8 (100-218)||(29562446-29562565)
chr8 (164-215)||(22072075-22072126)
chr8 (100-154)||(15208900-15208954)
chr8 (164-215)||(21964264-21964315)
[»] chr6 (2 HSPs)
chr6 (100-218)||(12965157-12965276)
chr6 (164-218)||(22481669-22481724)
[»] chr4 (8 HSPs)
chr4 (100-218)||(16246307-16246426)
chr4 (100-215)||(1669491-1669607)
chr4 (150-218)||(14655676-14655746)
chr4 (150-218)||(14674110-14674180)
chr4 (164-218)||(14240666-14240721)
chr4 (164-215)||(15377379-15377430)
chr4 (164-215)||(15401209-15401260)
chr4 (164-212)||(15397314-15397362)
[»] scaffold0092 (1 HSPs)
scaffold0092 (100-215)||(16082-16198)
[»] scaffold0074 (1 HSPs)
scaffold0074 (164-215)||(13261-13312)
[»] chr1 (3 HSPs)
chr1 (164-218)||(9187353-9187408)
chr1 (164-215)||(15432934-15432985)
chr1 (100-154)||(21480052-21480106)
[»] scaffold0174 (1 HSPs)
scaffold0174 (164-215)||(7116-7167)
[»] scaffold0109 (2 HSPs)
scaffold0109 (164-215)||(15783-15834)
scaffold0109 (164-215)||(30025-30076)
[»] chr3 (6 HSPs)
chr3 (164-215)||(16615955-16616006)
chr3 (164-215)||(16632073-16632124)
chr3 (100-154)||(15732265-15732319)
chr3 (100-154)||(15747350-15747404)
chr3 (100-154)||(15883809-15883863)
chr3 (100-154)||(15898988-15899042)
[»] chr2 (4 HSPs)
chr2 (164-215)||(19561091-19561142)
chr2 (100-154)||(20830058-20830112)
chr2 (100-154)||(20846962-20847016)
chr2 (187-220)||(32237983-32238016)
[»] chr5 (1 HSPs)
chr5 (164-215)||(37296109-37296160)
[»] scaffold0750 (1 HSPs)
scaffold0750 (187-215)||(677-705)
[»] scaffold0055 (1 HSPs)
scaffold0055 (163-218)||(8736-8792)
[»] scaffold0052 (1 HSPs)
scaffold0052 (163-218)||(75743-75799)
[»] scaffold0021 (1 HSPs)
scaffold0021 (163-218)||(60038-60094)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 100 - 220
Target Start/End: Complemental strand, 34197546 - 34197426
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagattccagttcgaatctccgattaaaacctcaggtaacacataaactt 199  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34197546 cggtttcaaagcaagaaatcaacaaacagaatctgactcaagtttttccgaagattccagttcgaatctccgattaaaacctcaggttacacataaactt 34197447  T
Q  200 catctttctttctcaaaaagc 220  Q
    |||||||||||||||||||||    
T  34197446 catctttctttctcaaaaagc 34197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 48216458 - 48216574
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttcc-gaagattccagttcgaa-tctccgattaaaacctcaggtaacacataaac 197  Q
    |||||| |||||||||||||||||| ||| | |||| ||||| |||||| ||||||||| ||||||| ||||||||||||||| |||||||||| ||| |    
T  48216458 cggttttaaagcaagaaatcaacaagcagaaccagattcaagcttttcctgaagattccggttcgaaatctccgattaaaaccacaggtaacacttaagc 48216557  T
Q  198 ttcatctttctttctcaa 215  Q
    |||| |||||||||||||    
T  48216558 ttca-ctttctttctcaa 48216574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 13550557 - 13550440
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttcc-gaagattccagttcgaa-tctccgattaaaacctcaggtaacacataaac 197  Q
    |||||| |||| ||||||||||||| ||| | |||| ||||| |||||| ||||||||| ||| ||| ||||||||||||||| |||||||||| ||| |    
T  13550557 cggttttaaagtaagaaatcaacaagcagaaccagattcaagcttttcctgaagattccggtttgaaatctccgattaaaaccacaggtaacacttaagc 13550458  T
Q  198 ttcatctttctttctcaaa 216  Q
    |||| ||||||||||||||    
T  13550457 ttca-ctttctttctcaaa 13550440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 34193258 - 34193293
Alignment:
Q  185 gtaacacataaacttcatctttctttctcaaaaagc 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  34193258 gtaacacataaacttcatctttctttctcaaaaagc 34193293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 5803581 - 5803527
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagat 154  Q
    |||||| |||||||||||||||||| ||| | |||| |||||| |||||||||||    
T  5803581 cggtttaaaagcaagaaatcaacaagcagaaccagattcaagtgtttccgaagat 5803527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 28505285 - 28505166
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaag-tttttccgaagattccagttcg-aatctccgattaaaacctcaggtaacacataaac 197  Q
    |||||| |||||||||||||||||||||| |||||| ||||| |||||| ||||||||| ||||| ||||||||||||||||| |||||||||| |||||    
T  28505285 cggttttaaagcaagaaatcaacaaacagaatcagattcaagctttttctgaagattccggttcgaaatctccgattaaaaccacaggtaacacttaaac 28505186  T
Q  198 ttcatctttctttctcaaaaa 218  Q
    |||| ||||||||||||||||    
T  28505185 ttca-ctttctttctcaaaaa 28505166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 29562565 - 29562446
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaag-tttttccgaagattccagttcg-aatctccgattaaaacctcaggtaacacataaac 197  Q
    |||||| ||||||||||| |||||||||| |||||| ||||| |||||| ||||||||| ||||| ||||||||||||||||| || ||||||| |||||    
T  29562565 cggttttaaagcaagaaagcaacaaacagaatcagattcaagctttttctgaagattccggttcgaaatctccgattaaaaccacatgtaacacttaaac 29562466  T
Q  198 ttcatctttctttctcaaaaa 218  Q
     ||| ||||||||||||||||    
T  29562465 ctca-ctttctttctcaaaaa 29562446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 22072126 - 22072075
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  22072126 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 22072075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 15208900 - 15208954
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagat 154  Q
    |||||| |||||||||||||||||| ||| |||||| |||||| |||||||||||    
T  15208900 cggttttaaagcaagaaatcaacaagcagaatcagattcaagtgtttccgaagat 15208954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 21964264 - 21964315
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  |||||||||||| |||||||||    
T  21964264 aatctccgattaaaaactcaggtaaaactcaaacttcatcttcctttctcaa 21964315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 12965276 - 12965157
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaag-tttttccgaagattccagttcg-aatctccgattaaaacctcaggtaacacataaac 197  Q
    |||||| |||||||||||||||||||||| |||||| ||||| |||||| ||||||||| ||||| ||||||||||||||||| |||||||||| |||||    
T  12965276 cggttttaaagcaagaaatcaacaaacagaatcagattcaagctttttctgaagattccggttcgaaatctccgattaaaaccacaggtaacacttaaac 12965177  T
Q  198 ttcatctttctttctcaaaaa 218  Q
    |||| ||||||||||||||||    
T  12965176 ttca-ctttctttctcaaaaa 12965157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 22481724 - 22481669
Alignment:
Q  164 aatctccgattaaaacctcaggtaa-cacataaacttcatctttctttctcaaaaa 218  Q
    ||||||| || |||||| ||||||| ||||||||||||||||||||| ||||||||    
T  22481724 aatctccaatcaaaaccacaggtaaacacataaacttcatctttcttgctcaaaaa 22481669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 16246426 - 16246307
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaag-tttttccgaagattccagttcgaa-tctccgattaaaacctcaggtaacacataaac 197  Q
    |||||| |||||||||||||||||||||| | |||| ||||| |||||| ||||||||| ||||||| ||||||||||||||| |||||||||| |||||    
T  16246426 cggttttaaagcaagaaatcaacaaacagaaccagattcaagctttttctgaagattccggttcgaaatctccgattaaaaccacaggtaacacttaaac 16246327  T
Q  198 ttcatctttctttctcaaaaa 218  Q
    |||| ||||||||||||||||    
T  16246326 ttca-ctttctttctcaaaaa 16246307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 1669491 - 1669607
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttcc-gaagattccagttcg-aatctccgattaaaacctcaggtaacacataaac 197  Q
    |||||| |||||||||||||||||||||| | |||| ||||| |||||| ||||||||| ||||| ||||||||||||||||| |||||||||| ||| |    
T  1669491 cggttttaaagcaagaaatcaacaaacagaaccagattcaagcttttcctgaagattccggttcgaaatctccgattaaaaccacaggtaacacttaagc 1669590  T
Q  198 ttcatctttctttctcaa 215  Q
    |||| |||||||||||||    
T  1669591 ttca-ctttctttctcaa 1669607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 14655676 - 14655746
Alignment:
Q  150 aagattccagttcgaa-tctccgattaaaacctcaggtaa-cacataaacttcatctttctttctcaaaaa 218  Q
    |||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||| || |||||    
T  14655676 aagattccagttcgaaatctccgattgaaaccacaggtaaacacataaacttcatctttcttgcttaaaaa 14655746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 14674110 - 14674180
Alignment:
Q  150 aagattccagttcgaa-tctccgattaaaacctcaggtaa-cacataaacttcatctttctttctcaaaaa 218  Q
    |||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||| || |||||    
T  14674110 aagattccagttcgaaatctccgattgaaaccacaggtaaacacataaacttcatctttcttgcttaaaaa 14674180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 14240721 - 14240666
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatc-tttctttctcaaaaa 218  Q
    ||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||    
T  14240721 aatctccgattaaaaccacaggtaacaaataaacttcaccttttctttctcaaaaa 14240666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 15377430 - 15377379
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  15377430 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 15377379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 15401260 - 15401209
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  15401260 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 15401209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 15397362 - 15397314
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttct 212  Q
    ||||||||||||||| ||||||||| ||  |||||||||||||||||||    
T  15397362 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttct 15397314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 16082 - 16198
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttcc-gaagattccagttcg-aatctccgattaaaacctcaggtaacacataaac 197  Q
    |||||| |||||||||||||||||| ||| | |||| ||||| |||||| ||||||||| ||| | ||||||||||||||||| |||||||||  ||| |    
T  16082 cggttttaaagcaagaaatcaacaagcagaaccagattcaagcttttcctgaagattccggtttgaaatctccgattaaaaccacaggtaacagttaagc 16181  T
Q  198 ttcatctttctttctcaa 215  Q
    |||| |||||||||||||    
T  16182 ttca-ctttctttctcaa 16198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 13312 - 13261
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  13312 aatctccgattaaaaactcaggtaaaacttaaacttcatctttctttctcaa 13261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 9187408 - 9187353
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatc-tttctttctcaaaaa 218  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||||||||||    
T  9187408 aatctccgattaaaaccacaggtaacacataaacttcaccttttctttctcaaaaa 9187353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 15432934 - 15432985
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  15432934 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 15432985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 21480052 - 21480106
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagat 154  Q
    |||||| |||||||||||||||||| ||| | |||| |||||| |||||||||||    
T  21480052 cggttttaaagcaagaaatcaacaagcagaaccagattcaagtgtttccgaagat 21480106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 7116 - 7167
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  7116 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 7167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 15783 - 15834
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  15783 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 15834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 30025 - 30076
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  30025 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 30076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 16616006 - 16615955
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  16616006 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 16615955  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 16632124 - 16632073
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  16632124 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 16632073  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 15732319 - 15732265
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagat 154  Q
    |||||| |||||||||||||||||| ||| | |||| |||||| |||||||||||    
T  15732319 cggttttaaagcaagaaatcaacaagcagaaccagattcaagtgtttccgaagat 15732265  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 15747404 - 15747350
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagat 154  Q
    |||||| |||||||||||||||||| ||| | |||| |||||| |||||||||||    
T  15747404 cggttttaaagcaagaaatcaacaagcagaaccagattcaagtgtttccgaagat 15747350  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 15883863 - 15883809
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagat 154  Q
    |||||| |||||||||||||||||| ||| | |||| |||||| |||||||||||    
T  15883863 cggttttaaagcaagaaatcaacaagcagaaccagattcaagtgtttccgaagat 15883809  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 15899042 - 15898988
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagat 154  Q
    |||||| |||||||||||||||||| ||| | |||| |||||| |||||||||||    
T  15899042 cggttttaaagcaagaaatcaacaagcagaaccagattcaagtgtttccgaagat 15898988  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 19561142 - 19561091
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||    
T  19561142 aatctccgattaaaaactcaggtaaaactcaaacttcatctttctttctcaa 19561091  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 20830058 - 20830112
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagat 154  Q
    |||||| |||||||||||||||||| ||| | |||| |||||| |||||||||||    
T  20830058 cggttttaaagcaagaaatcaacaagcagaaccagattcaagtgtttccgaagat 20830112  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 20846962 - 20847016
Alignment:
Q  100 cggtttcaaagcaagaaatcaacaaacaggatcagactcaagtttttccgaagat 154  Q
    |||||| |||||||||||||||||| ||| | |||| |||||| |||||||||||    
T  20846962 cggttttaaagcaagaaatcaacaagcagaaccagattcaagtgtttccgaagat 20847016  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 32238016 - 32237983
Alignment:
Q  187 aacacataaacttcatctttctttctcaaaaagc 220  Q
    ||||| ||||||||||||||||||||||||||||    
T  32238016 aacacgtaaacttcatctttctttctcaaaaagc 32237983  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 37296160 - 37296109
Alignment:
Q  164 aatctccgattaaaacctcaggtaacacataaacttcatctttctttctcaa 215  Q
    ||||||||||||||| ||||||||| ||  ||||||||| ||||||||||||    
T  37296160 aatctccgattaaaaactcaggtaaaactcaaacttcatatttctttctcaa 37296109  T

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Target: scaffold0750 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 705 - 677
Alignment:
Q  187 aacacataaacttcatctttctttctcaa 215  Q
    |||||||||||||||||||||||||||||    
T  705 aacacataaacttcatctttctttctcaa 677  T

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Target: scaffold0055 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 8792 - 8736
Alignment:
Q  163 gaatctccgattaaaacctcaggtaa-cacataaacttcatctttctttctcaaaaa 218  Q
    |||||||| ||| ||||| ||||||| ||||||||||||||||||||| || |||||    
T  8792 gaatctccaattgaaaccacaggtaaacacataaacttcatctttcttgcttaaaaa 8736  T

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Target: scaffold0052 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 75743 - 75799
Alignment:
Q  163 gaatctccgattaaaacctcaggtaa-cacataaacttcatctttctttctcaaaaa 218  Q
    |||||||| ||| ||||| ||||||| ||||||||||||||||||||| || |||||    
T  75743 gaatctccaattgaaaccacaggtaaacacataaacttcatctttcttgcttaaaaa 75799  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 60038 - 60094
Alignment:
Q  163 gaatctccgattaaaacctcaggtaa-cacataaacttcatctttctttctcaaaaa 218  Q
    |||||||| ||| ||||| ||||||| ||||||||||||||||||||| || |||||    
T  60038 gaatctccaattgaaaccacaggtaaacacataaacttcatctttcttgcttaaaaa 60094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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