View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13802_high_5 (Length: 534)

Name: NF13802_high_5
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13802_high_5
NF13802_high_5
[»] chr5 (9 HSPs)
chr5 (290-520)||(17879267-17879497)
chr5 (10-104)||(15047253-15047347)
chr5 (335-432)||(15046740-15046837)
chr5 (10-59)||(17879560-17879609)
chr5 (341-381)||(5326476-5326516)
chr5 (19-79)||(15014517-15014577)
chr5 (19-77)||(14773115-14773173)
chr5 (197-247)||(15046916-15046966)
chr5 (431-496)||(5325911-5325976)
[»] chr4 (2 HSPs)
chr4 (21-118)||(54157140-54157236)
chr4 (23-83)||(53869107-53869166)
[»] chr1 (1 HSPs)
chr1 (164-245)||(36877492-36877571)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 290 - 520
Target Start/End: Complemental strand, 17879497 - 17879267
Alignment:
Q  290 agcatggacattttactgtatgtcatctttgaatggtagtattagttagctaagattttggaaatactgctatacctcatttacataaataatgatatac 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17879497 agcatggacattttactgtatgtcatctttgaatggtagtattagttagctaagattttggaaatactgctatacctcatttacataaatactgatatac 17879398  T
Q  390 ttgttttaagctgaagtttgattcggttcaacagataatcttttgatacgttaactgtgattgctctgtgaagctttattagttagacaactttcattct 489  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17879397 ttatttcaagctgaagtttgattcggttcaacagataatcttttgatacgttaactgtgattgctctgtgaagctttattagttagacaactttcactct 17879298  T
Q  490 tattacacaaccttcactttcatgtccattt 520  Q
    |||||||||||||||||||||||||||||||    
T  17879297 tattacacaaccttcactttcatgtccattt 17879267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 15047347 - 15047253
Alignment:
Q  10 ataattctgcatgcatattgttttaaataattgttggatgggttagataaatagatatttaatgtggtgaatgtcaggttttggaattatgactt 104  Q
    |||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||| || || |||||||||||||||    
T  15047347 ataattctacatgcatattgatataaataattgttggatggattagataaatagatatctaatgtggtgaatggcatgtcttggaattatgactt 15047253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 432
Target Start/End: Complemental strand, 15046837 - 15046740
Alignment:
Q  335 ttagctaagattttggaaatactgctatacctcatttacataaataatgatatacttgttttaagctgaagtttgattcggttcaacagataatcttt 432  Q
    |||||||| |||||||||||| ||||||| || ||||||||||||| || ||||| ||||| |||| ||||||||||| ||||| | |||||||||||    
T  15046837 ttagctaaaattttggaaatattgctatatcttatttacataaatattgctatacctgtttcaagcagaagtttgatttggttctatagataatcttt 15046740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 17879609 - 17879560
Alignment:
Q  10 ataattctgcatgcatattgttttaaataattgttggatgggttagataa 59  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  17879609 ataattctacatgcatattgttttaaataattgttggattggttagataa 17879560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 5326516 - 5326476
Alignment:
Q  341 aagattttggaaatactgctatacctcatttacataaataa 381  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  5326516 aagattttggaaatattgctatacctcatttacaaaaataa 5326476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 15014577 - 15014517
Alignment:
Q  19 catgcatattgttttaaataattgttggatgggttagataaatagatatttaatgtggtga 79  Q
    ||||||||||| | || |||| || |||||||||||||||||||||||||||  |||||||    
T  15014577 catgcatattgctgtacataactgctggatgggttagataaatagatatttatcgtggtga 15014517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 14773173 - 14773115
Alignment:
Q  19 catgcatattgttttaaataattgttggatgggttagataaatagatatttaatgtggt 77  Q
    ||||||||||| | ||  | |||||| |||||||||||||||||||||||| |||||||    
T  14773173 catgcatattgatgtacttcattgtttgatgggttagataaatagatattttatgtggt 14773115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 15046966 - 15046916
Alignment:
Q  197 gctttaatcttcagattaacatttgattaagcagattgacagctagtttaa 247  Q
    ||||| ||||||||||| |||||| |||||||||||||| || ||||||||    
T  15046966 gctttgatcttcagattgacatttaattaagcagattgaaaggtagtttaa 15046916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 496
Target Start/End: Complemental strand, 5325976 - 5325911
Alignment:
Q  431 tttgatacgttaactgtgattgctctgtgaagctttattagttagacaactttcattcttattaca 496  Q
    ||||||| ||| ||||||||||| ||    |||||||||| |||||||||||||| ||||||||||    
T  5325976 tttgatatgttgactgtgattgcactaatgagctttattaattagacaactttcactcttattaca 5325911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 54157236 - 54157140
Alignment:
Q  21 tgcatattgttttaaataattgttggatgggttagataaatagatatttaatgtggtgaatgtcaggttttggaattatgacttcattcaaacttttt 118  Q
    ||||||||| |||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||  | |||  ||||||| ||||| ||||||||||    
T  54157236 tgcatattgctttacataattgttggatgg-ttagataaatagctatttaatgtggtgaatgacacatcttgttattatgatttcatccaaacttttt 54157140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 53869107 - 53869166
Alignment:
Q  23 catattgttttaaataattgttggatgggttagataaatagatatttaatgtggtgaatgt 83  Q
    ||||||| | || ||||||||| ||||| ||| |||||||| |||||||||||||||||||    
T  53869107 catattgctgtagataattgtttgatgg-ttaaataaatagctatttaatgtggtgaatgt 53869166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 36877492 - 36877571
Alignment:
Q  164 ttatatagcatgtagtagtttgtgtatatgtatgctttaatcttcagattaacatttgattaagcagattgacagctagttt 245  Q
    |||||||||||| |||||| | |||||||  ||||||||||||| | ||| | |||||||||||| |||||| | |||||||    
T  36877492 ttatatagcatgcagtagtctatgtatat--atgctttaatctttaaattgaaatttgattaagctgattgaaaactagttt 36877571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University