View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13802_low_1 (Length: 767)
Name: NF13802_low_1
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_low_1 |
 | |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 722; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 18 - 767
Target Start/End: Original strand, 29690250 - 29690999
Alignment:
| Q |
18 |
aagagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcattaccggaaaatttaccaccgtcgaaactaatcacga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29690250 |
aagagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcattaccggaaaatttaccaccgtcgaaactaatcacga |
29690349 |
T |
|
| Q |
118 |
gaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccttgaaatcttcaccggaaaatttagcagcggcgaaacggaccgaagatcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29690350 |
gaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccctgaaatcttcaccggaaaatttagcagcggcgaaacggaccgaagatcg |
29690449 |
T |
|
| Q |
218 |
atctaccatctgtccatcttcaccggccggaagtccaatgaaaaggaagaagagaacttcagaatcatatttacctgacgattgttgggagattatcata |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29690450 |
atctaccatctgtccatcttcaccggccggaagtccattgaaaaggaagaagagaacttcagaatcatatttacctgacgattgttgggagattatcata |
29690549 |
T |
|
| Q |
318 |
aaatcatctcaaatcaacttcaattctctatctctcgtttcaaaacaaatcctctccatcactaatcgtcttcggttttcactctccgtaactgatgcat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
29690550 |
aaatcatctcaaatcaacttcaattctctatctctcgtttcaaaacaaatcctctccatcactaatcgtcttcggttttcactctccgtcactgatgcat |
29690649 |
T |
|
| Q |
418 |
cacgtcattacctccctcgtctcttgaaaaggttcaccaacctcacttccctcgacctctcccgctacaactatttaccgaacgatcttctctgcaaaat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29690650 |
cacgtcattacctccctcgtctcttgaaaaggttcaccaacctcacttccctcgacctctcccgctacaactatttaccgaacgatcttctctgcaaaat |
29690749 |
T |
|
| Q |
518 |
atctaacttcccattgaaaaaactcacatcactcaaactccctgtccctaccccctttccagcagatggcttgctcgcattctgccaaaccgttacaaca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29690750 |
atctaacttcccattgaaaaaactcacatcactcaaactccctgtccctaccccctttccagcagatggcttgctcgcattctgccaaaccgttacaaca |
29690849 |
T |
|
| Q |
618 |
ttgacctctctcacttgttcccgtgcttcttttgttcacagccagctcttacccgttgctcattgtttccctttgctcaaacacctcgacctcactcgcc |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
29690850 |
ttgacctctctcacttgttcccgtgcttcttttgttcacagccagctcttacccgttgctcattgtttccctttgctcaaacacctcgacctctctcgcc |
29690949 |
T |
|
| Q |
718 |
cttggtacagcctctctcagcctgttgaggatcatattaattgaagtagc |
767 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
29690950 |
cttggtacaacctctctcagcctgttgaggatcatattaatggaattagc |
29690999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 18 - 767
Target Start/End: Original strand, 29717762 - 29718511
Alignment:
| Q |
18 |
aagagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcattaccggaaaatttaccaccgtcgaaactaatcacga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29717762 |
aagagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcattaccggaaaatttaccaccgtcgaaactaatcacga |
29717861 |
T |
|
| Q |
118 |
gaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccttgaaatcttcaccggaaaatttagcagcggcgaaacggaccgaagatcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29717862 |
gaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccctgaaatcttcaccggaaaatttagcagcggcgaaacggaccgaagatcg |
29717961 |
T |
|
| Q |
218 |
atctaccatctgtccatcttcaccggccggaagtccaatgaaaaggaagaagagaacttcagaatcatatttacctgacgattgttgggagattatcata |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29717962 |
atctaccatctgtccatcttcaccggccggaagtccattgaaaaggaagaagagaacttcagaatcatatttacctgacgattgttgggagattatcata |
29718061 |
T |
|
| Q |
318 |
aaatcatctcaaatcaacttcaattctctatctctcgtttcaaaacaaatcctctccatcactaatcgtcttcggttttcactctccgtaactgatgcat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
29718062 |
aaatcatctcaaatcaacttcaattctctatctctcgtttcaaaacaaatcctctccatcactaatcgtcttcggttttcactctccgtcactgatgcat |
29718161 |
T |
|
| Q |
418 |
cacgtcattacctccctcgtctcttgaaaaggttcaccaacctcacttccctcgacctctcccgctacaactatttaccgaacgatcttctctgcaaaat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29718162 |
cacgtcattacctccctcgtctcttgaaaaggttcaccaacctcacttccctcgacctctcccgctacaactatttaccgaacgatcttctctgcaaaat |
29718261 |
T |
|
| Q |
518 |
atctaacttcccattgaaaaaactcacatcactcaaactccctgtccctaccccctttccagcagatggcttgctcgcattctgccaaaccgttacaaca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29718262 |
atctaacttcccattgaaaaaactcacatcactcaaactccctgtccctaccccctttccagcagatggcttgctcgcattctgccaaaccgttacaaca |
29718361 |
T |
|
| Q |
618 |
ttgacctctctcacttgttcccgtgcttcttttgttcacagccagctcttacccgttgctcattgtttccctttgctcaaacacctcgacctcactcgcc |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29718362 |
ttgacctctctcacttgttcccgtgcttcttttgttcacagccagctcttacccgttgctcattgtttccctttgctcaaacacctcgacctctctcgcc |
29718461 |
T |
|
| Q |
718 |
cttggtacagcctctctcagcctgttgaggatcatattaattgaagtagc |
767 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
29718462 |
cttggtacaacctctctcagcctgttgaggatcatattaatggaattagc |
29718511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 29690156 - 29690340
Alignment:
| Q |
20 |
gagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcattaccggaaaatttaccaccgtcgaaactaatcacgaga |
119 |
Q |
| |
|
||||||| ||||| |||| |||||||| ||||||| |||||||| | || |||||||| | | ||||||| ||||||||||||||||| | || |||| |
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|
| T |
29690156 |
gagaacctgctgctctcacaccctgcccatgaaaaggaaaagaatttgttatctgaaatcttcatcggaaaacttaccaccgtcgaaactgaccaagaga |
29690255 |
T |
|
| Q |
120 |
accggctgctctcataccctgccaatgaaagcgataagaacttgttccttgaaatcttcaccggaaaatttagcagcggcgaaac |
204 |
Q |
| |
|
||| ||||| |||||||||||||||||||| ||| |||||| | |||| ||||||| | ||||||||||||| || || |||||| |
|
|
| T |
29690256 |
accagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcattaccggaaaatttaccaccgtcgaaac |
29690340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 29717668 - 29717852
Alignment:
| Q |
20 |
gagaaccagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcattaccggaaaatttaccaccgtcgaaactaatcacgaga |
119 |
Q |
| |
|
||||||| ||||| |||| |||||||| ||||||| |||||||| | || |||||||| | | ||||||| ||||||||||||||||| | || |||| |
|
|
| T |
29717668 |
gagaacctgctgctctcacaccctgcccatgaaaaggaaaagaatttgttatctgaaatcttcatcggaaaacttaccaccgtcgaaactgaccaagaga |
29717767 |
T |
|
| Q |
120 |
accggctgctctcataccctgccaatgaaagcgataagaacttgttccttgaaatcttcaccggaaaatttagcagcggcgaaac |
204 |
Q |
| |
|
||| ||||| |||||||||||||||||||| ||| |||||| | |||| ||||||| | ||||||||||||| || || |||||| |
|
|
| T |
29717768 |
accagctgcgctcataccctgccaatgaaaacgaaaagaaccttttccctgaaatcattaccggaaaatttaccaccgtcgaaac |
29717852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 425 - 560
Target Start/End: Complemental strand, 30828014 - 30827877
Alignment:
| Q |
425 |
ttacctccctcgtctcttgaaaaggttcaccaacctcacttccctcgacctctcccgc--tacaactatttaccgaacgatcttctctgcaaaatatcta |
522 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||| | ||||| ||| || |||| |||||| |||||| |||| |
|
|
| T |
30828014 |
ttaccttcctcgtctcttcaaaaggttcaccaatctcacctccctcgacctctcccactatacaagtatccactcgacgaacttctcatcaaaatctcta |
30827915 |
T |
|
| Q |
523 |
acttcccattgaaaaaactcacatcactcaaactccct |
560 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30827914 |
atttcccattgaaacaactcacatcactcaaactccct |
30827877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 334 - 559
Target Start/End: Complemental strand, 33161499 - 33161277
Alignment:
| Q |
334 |
acttcaattctctatctctcgtttcaaaacaaatcctctccatcactaatcgtcttcggttttcactctccgtaactgatgcatcacgtcattacctccc |
433 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||| | ||||||||||||||| ||||||| || |||||| || | | | || ||| | || |||||| |
|
|
| T |
33161499 |
acttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactcaccctcaaaaactcaacacaccctttcctccc |
33161400 |
T |
|
| Q |
434 |
tcgtctcttgaaaaggttcaccaacctcacttccctcgacctctcccgctacaactatttaccgaacgatcttctctgcaaaatatctaacttcccattg |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||| || | || |||||| ||||||| | ||| ||||||||| |
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|
| T |
33161399 |
tcgtctcttgaaaaggttcaccaacctcacctcccttgacctctcccactatggctatgaactagatgagcttctccgcaaaatctataatttcccattg |
33161300 |
T |
|
| Q |
534 |
aaaaaactcacatcactcaaactccc |
559 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
33161299 |
---aaactctcatcactcaaactccc |
33161277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 29690156 - 29690249
Alignment:
| Q |
116 |
gagaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccttgaaatcttcaccggaaaatttagcagcggcgaaacggacc |
209 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||| || ||||| ||||| ||||||||||| ||||||| ||| || || |||||| |||| |
|
|
| T |
29690156 |
gagaacctgctgctctcacaccctgcccatgaaaaggaaaagaatttgttatctgaaatcttcatcggaaaacttaccaccgtcgaaactgacc |
29690249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 29717668 - 29717761
Alignment:
| Q |
116 |
gagaaccggctgctctcataccctgccaatgaaagcgataagaacttgttccttgaaatcttcaccggaaaatttagcagcggcgaaacggacc |
209 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||| || ||||| ||||| ||||||||||| ||||||| ||| || || |||||| |||| |
|
|
| T |
29717668 |
gagaacctgctgctctcacaccctgcccatgaaaaggaaaagaatttgttatctgaaatcttcatcggaaaacttaccaccgtcgaaactgacc |
29717761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 6427394 - 6427344
Alignment:
| Q |
428 |
cctccctcgtctcttgaaaaggttcaccaacctcacttccctcgacctctc |
478 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
6427394 |
cctccctcttctcttcaaaaggttcacacacctcacctccctcgacctctc |
6427344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 1524174 - 1524211
Alignment:
| Q |
435 |
cgtctcttgaaaaggttcaccaacctcacttccctcga |
472 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1524174 |
cgtctcttccaaaggttcaccaacctcacttccctcga |
1524211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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