View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13802_low_10 (Length: 460)

Name: NF13802_low_10
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13802_low_10
NF13802_low_10
[»] chr6 (2 HSPs)
chr6 (222-286)||(1345311-1345375)
chr6 (96-180)||(30863971-30864054)
[»] chr2 (1 HSPs)
chr2 (50-120)||(12043092-12043162)
[»] chr5 (1 HSPs)
chr5 (114-178)||(28577171-28577235)
[»] chr3 (1 HSPs)
chr3 (87-174)||(15800037-15800124)
[»] chr4 (1 HSPs)
chr4 (137-175)||(19427045-19427083)
[»] chr8 (2 HSPs)
chr8 (86-180)||(30919420-30919514)
chr8 (96-180)||(30035358-30035441)


Alignment Details
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 1345311 - 1345375
Alignment:
Q  222 aataataaacttacagctttctcagctggaccagtggcaggagcatccaagacaagcactccact 286  Q
    ||||| |||||||| |||||  |||||||||||||| ||||||||||||||||||||||||||||    
T  1345311 aataacaaacttactgcttttccagctggaccagtgacaggagcatccaagacaagcactccact 1345375  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 30863971 - 30864054
Alignment:
Q  96 agattcatgtccaatattgatacacgcttgagactcgtatcgattgagttaaattttgtattgaatcgagatatgactcgcatgt 180  Q
    |||||||||||||| || ||||||| || |||| | |||||||||||||| | ||| |||||||||||||||| ||||| |||||    
T  30863971 agattcatgtccaa-atagatacacactagagatttgtatcgattgagttcattttagtattgaatcgagatacgactcacatgt 30864054  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 12043162 - 12043092
Alignment:
Q  50 atcatagtgaaccggggttcgacataatgaatagggattcaatatcagattcatgtccaatattgatacac 120  Q
    ||||||||||  | |||||| || ||||||| ||||||||||||| ||||||||||||||||| |||||||    
T  12043162 atcatagtgactcagggttcaacgtaatgaacagggattcaatatgagattcatgtccaatatagatacac 12043092  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 28577235 - 28577171
Alignment:
Q  114 gatacacgcttgagactcgtatcgattgagttaaattttgtattgaatcgagatatgactcgcat 178  Q
    ||||||| || |||| || |||| |||||||| ||||||||||||||||| ||||||||||||||    
T  28577235 gatacacactagagattcatatcaattgagttcaattttgtattgaatcgggatatgactcgcat 28577171  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 15800124 - 15800037
Alignment:
Q  87 ttcaatatcagattcatgtccaatattgatacacgcttgagactcgtatcgattgagttaaattttgtattgaatcgagatatgactc 174  Q
    |||||||| |||||||||||||| || |||||||  | | || |||||||||||| ||| |||||||||||||| | ||||| |||||    
T  15800124 ttcaatatgagattcatgtccaaaatagatacacattagggattcgtatcgattgggttcaattttgtattgaacccagatacgactc 15800037  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Complemental strand, 19427083 - 19427045
Alignment:
Q  137 gattgagttaaattttgtattgaatcgagatatgactcg 175  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  19427083 gattgagtttaattttgtattgaatcgagatatgactcg 19427045  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 30919420 - 30919514
Alignment:
Q  86 attcaatatcagattcatgtccaatattgatacacgcttgagactcgtatcgattgagttaaattttgtattgaatcgagatatgactcgcatgt 180  Q
    |||||| || ||||||||||||||||| ||| ||| ||  ||| |||||| ||||||||| | |||||| | ||| |||||||  ||||||||||    
T  30919420 attcaagatgagattcatgtccaatatagatgcacactaaagattcgtattgattgagttcagttttgtgtcgaaccgagatacaactcgcatgt 30919514  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 30035441 - 30035358
Alignment:
Q  96 agattcatgtccaatattgatacacgcttgagactcgtatcgattgagttaaattttgtattgaatcgagatatgactcgcatgt 180  Q
    |||||||||||||| || |||| || ||||||| | ||||||||||| || ||||  ||||||||| |||||| ||||| |||||    
T  30035441 agattcatgtccaa-atagatatacacttgagatttgtatcgattgaattcaattaagtattgaattgagatacgactcacatgt 30035358  T

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