View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13802_low_16 (Length: 380)
Name: NF13802_low_16
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 34673761 - 34674114
Alignment:
| Q |
17 |
gttgatccattcaaaagtaggttcaactaaaaaactaggcgccttatgcatgcatatgatgggatatgagatattatggaaaatgctagatgtcgctctt |
116 |
Q |
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| T |
34673761 |
gttgatccattcaaaattaggttcaactaaaaaactaggcgccttatgcat----atgatgggatatgagatattatgaaaaatgctagatgtcgctctt |
34673856 |
T |
|
| Q |
117 |
atatt-atattcctttctgtcttaaatttcattagttactcctaatttattagatgaggttatgtatgcatgtgaaattacacttgtttgtgaggtttca |
215 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |
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| T |
34673857 |
atatttatattcctttctgtcttaaatttcattagttactcctaatttattagatgagttattgtgtgcatgtgaaattacacttgtttgtgaggtttca |
34673956 |
T |
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| Q |
216 |
caataattttgttgtttacaaagtttggtgcgacttacctcacaaattttactctatttcttaattagattgacttgatgattttgtacaacggagctgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34673957 |
caataattttgttgtttacaaagtttggtgcgacttacctgacaaattttactcaatttcttaattagattgacttgatgattttgtacaacggagctgc |
34674056 |
T |
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| Q |
316 |
tggttcatgtgtaagcatttctccacacctatgtatggtgtttttgttagtattattt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34674057 |
tggttcatgtgtaagcatttctccacacctatgtatggtgtttttgttagttttattt |
34674114 |
T |
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