View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13802_low_18 (Length: 372)
Name: NF13802_low_18
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_low_18 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 34320516 - 34320145
Alignment:
| Q |
1 |
tcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320516 |
tcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattc |
34320417 |
T |
|
| Q |
101 |
ctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34320416 |
ctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaatttgtcgggaaacaaagggttcaatatttt |
34320317 |
T |
|
| Q |
201 |
atctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatctttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320316 |
atctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatctttt |
34320217 |
T |
|
| Q |
301 |
aatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatacattggaa |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34320216 |
aatctgccagcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgatactttggaa |
34320145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 5 - 350
Target Start/End: Complemental strand, 34329420 - 34329075
Alignment:
| Q |
5 |
gtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctcc |
104 |
Q |
| |
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|||| |||| |||||| |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34329420 |
gtaaattttcgttgataatggaccaatcattcatgaagttgaaaagtgtcgaaccatcaccaattttgtgactcatgcaaacacttatcgccattcctcc |
34329321 |
T |
|
| Q |
105 |
acatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatattttatct |
204 |
Q |
| |
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|||||| |||||||||||||||| ||||| ||||| || ||||||||||| ||||||||||||||||| || || |||||||||||||| | ||| ||| |
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| T |
34329320 |
acatgcaaaacagttgatttgaatggctattaaagtttcactccaatccatttctttccattgcaattcatccgggaacaaagggttcaacaatttttct |
34329221 |
T |
|
| Q |
205 |
gtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatc |
304 |
Q |
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| ||||||| ||| | ||||| ||||||||||||| |||||||| | ||| | ||||||||||||||||||||| | ||||||||||||||| || | |
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| T |
34329220 |
atagggttttggaggacttctgatagtttgtttttgacatttgtgactagaaacggcacaccttgatcattacattcgacggtaattttatctttcaacc |
34329121 |
T |
|
| Q |
305 |
tgccagcaaaagggtagtatttagataaaagttgagataaagattt |
350 |
Q |
| |
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| ||||||||||| || ||||| ||||||||||||||||||||||| |
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| T |
34329120 |
ttccagcaaaaggataatatttggataaaagttgagataaagattt |
34329075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 347
Target Start/End: Complemental strand, 34333267 - 34333175
Alignment:
| Q |
255 |
aaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaaga |
347 |
Q |
| |
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||||||| |||||||||| |||||||| |||| || | |||||| || ||||| ||||| ||||||||| | |||| || |||||||||||| |
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| T |
34333267 |
aaatgacgcaccttgatcgttacattcgatggaaagctgatctttgaacctgcctgcaaaggggtagtatatggatagaatttgagataaaga |
34333175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 36633111 - 36633456
Alignment:
| Q |
11 |
tttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatgc |
110 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36633111 |
tttggttgatagtggcccaatcattcatgaagttgaaaacggttgaagcatcaccaattttgtgactcatgcaaatacttatagccattcctccacatgc |
36633210 |
T |
|
| Q |
111 |
gaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatattttatctgtgggg |
210 |
Q |
| |
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|| ||||| ||||||| ||||| ||| | | ||||||||||||||||||||||| ||||| || || |||||||||||||| | ||| || ||||| |
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| T |
36633211 |
aaagcagtttatttgaatggctataaaacttgcactccaatccatgtctttccattgtaattcatcagggaacaaagggttcaacaatttttcagtggga |
36633310 |
T |
|
| Q |
211 |
tttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccag |
310 |
Q |
| |
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|||| |||| ||||||||| |||||||| | ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| | || |||| |
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| T |
36633311 |
ttttgaagaaactctgaaagattgttttttacctttgtgacaaaaaataacacaccttgatcattgcattcaatggtaattttatctttaatcctaccag |
36633410 |
T |
|
| Q |
311 |
caaaagggtagtatttagataaaagttgagataaagattttcgaag |
356 |
Q |
| |
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||||| | ||| |||||||||||||||||||||||||||||||||| |
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| T |
36633411 |
caaaatgatagaatttagataaaagttgagataaagattttcgaag |
36633456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 36627543 - 36627897
Alignment:
| Q |
10 |
ttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatg |
109 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
36627543 |
ttttggttgataatggcccaatcattcatgaatttgaaaatggttgaagcatcaccaattttgtgagtcatgcaaatacttattaccattcctccacatg |
36627642 |
T |
|
| Q |
110 |
cgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatattttatctgtggg |
209 |
Q |
| |
|
|| || || ||||||| ||||| ||| | | ||||||||||| ||||||||||| ||||| || || |||||||||||||| | ||| || || || |
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| T |
36627643 |
taaaccaatttatttgaatggctataaaacttgctctccaatccatttctttccattgtaattcatcagggaacaaagggttcaacaatttttcagtagg |
36627742 |
T |
|
| Q |
210 |
gtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgcca |
309 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| ||||| |||| ||||| ||||||||||||||||||||| ||||||| | || ||| |
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|
| T |
36627743 |
attttgaagaatctctgaaagtttgttttttatctttgtgactaaaaacaacaccccttggtcattacattcaatggtaattctatctttaatcctacca |
36627842 |
T |
|
| Q |
310 |
gcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgata |
364 |
Q |
| |
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|||||||| |||||||| |||| |||||||||||| |||||||||||| |||||| |
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| T |
36627843 |
gcaaaaggatagtatttggatagaagttgagataaggattttcgaagttgtgata |
36627897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 36622306 - 36622659
Alignment:
| Q |
10 |
ttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatg |
109 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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|
| T |
36622306 |
ttttggtagataatggcccaatcattcatgaagttgaaaatggttgcagcatcaccaattttgtgactaatgcaaatacttattaccattcctccgcatg |
36622405 |
T |
|
| Q |
110 |
cgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatattttatctgtggg |
209 |
Q |
| |
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| || || || | ||||| ||||| ||| | | ||||||||||| ||||||||||| ||||| || || ||||||||||| || | ||| || ||||| |
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| T |
36622406 |
caaaccaatttacttgaatggctataaaactcgctctccaatccatttctttccattgtaattcatcagggaacaaagggtttaacaatttttcagtggg |
36622505 |
T |
|
| Q |
210 |
gtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgcca |
309 |
Q |
| |
|
|||| | ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||| |
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| T |
36622506 |
attttgaacaatctctgaaagtttgttttttacctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcctacca |
36622605 |
T |
|
| Q |
310 |
gcaaaagggtagtatttagataaaagttgagataaagattttcgaagtagtgat |
363 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||| |||||||| ||| ||||| |
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| T |
36622606 |
gcaaaatgatagtatttagatagaagttgagataaggattttcggagttgtgat |
36622659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 352
Target Start/End: Original strand, 45306835 - 45307009
Alignment:
| Q |
178 |
ggaaacaaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattac |
277 |
Q |
| |
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|||||||||| ||||||| ||| |||| ||| |||| ||| || || || ||||| ||||| |||||||| || | ||| | ||||||||| || |||| |
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| T |
45306835 |
ggaaacaaagagttcaatgtttcctctgagggattttggaggatgtcggatagtttattttttatctttgtcactataaacgtcacaccttggtcgttac |
45306934 |
T |
|
| Q |
278 |
attcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttc |
352 |
Q |
| |
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|||||||||||||||||||||| || || ||||| ||| ||||||||| |||| || ||||||||| ||||||| |
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| T |
45306935 |
attcaatggtaattttatctttcaacctaccagcgaaaatgtagtatttggatagaatttgagataaggattttc |
45307009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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