View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13802_low_2 (Length: 655)

Name: NF13802_low_2
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13802_low_2
NF13802_low_2
[»] chr2 (11 HSPs)
chr2 (25-639)||(16400685-16401307)
chr2 (458-511)||(43711975-43712028)
chr2 (455-513)||(32832593-32832651)
chr2 (455-518)||(39729014-39729077)
chr2 (455-513)||(41069673-41069731)
chr2 (455-515)||(6752074-6752134)
chr2 (169-200)||(36688364-36688395)
chr2 (456-527)||(40204728-40204799)
chr2 (446-495)||(2220937-2220986)
chr2 (453-502)||(45076266-45076315)
chr2 (468-528)||(8209311-8209371)
[»] chr1 (13 HSPs)
chr1 (416-532)||(3950256-3950372)
chr1 (456-532)||(19431391-19431467)
chr1 (448-526)||(34430031-34430109)
chr1 (463-513)||(17923859-17923909)
chr1 (455-513)||(19456310-19456368)
chr1 (455-532)||(49177259-49177334)
chr1 (446-526)||(44448489-44448569)
chr1 (456-503)||(26056833-26056880)
chr1 (455-513)||(24671189-24671247)
chr1 (455-513)||(48914985-48915043)
chr1 (455-513)||(48915376-48915434)
chr1 (480-517)||(12136273-12136310)
chr1 (456-509)||(26478599-26478652)
[»] chr7 (14 HSPs)
chr7 (447-532)||(684992-685077)
chr7 (449-532)||(11369049-11369132)
chr7 (455-532)||(40591029-40591106)
chr7 (455-550)||(30061144-30061237)
chr7 (456-549)||(32204739-32204832)
chr7 (455-514)||(37685190-37685249)
chr7 (487-550)||(41851274-41851337)
chr7 (455-513)||(2628436-2628494)
chr7 (455-513)||(32279294-32279352)
chr7 (463-513)||(33884051-33884101)
chr7 (448-504)||(24833115-24833171)
chr7 (456-501)||(33957482-33957527)
chr7 (456-513)||(42971644-42971701)
chr7 (470-550)||(43368501-43368581)
[»] chr5 (8 HSPs)
chr5 (456-523)||(33953151-33953218)
chr5 (456-518)||(27554924-27554986)
chr5 (455-517)||(22653509-22653571)
chr5 (456-513)||(19824617-19824674)
chr5 (456-525)||(22029851-22029920)
chr5 (457-504)||(18267856-18267903)
chr5 (456-513)||(31882604-31882659)
chr5 (24-72)||(30784250-30784298)
[»] chr3 (7 HSPs)
chr3 (456-551)||(16278767-16278862)
chr3 (444-532)||(42466947-42467034)
chr3 (455-513)||(10688641-10688699)
chr3 (455-513)||(39485470-39485528)
chr3 (455-513)||(47548869-47548927)
chr3 (483-527)||(39488509-39488553)
chr3 (455-527)||(46348392-46348464)
[»] chr8 (8 HSPs)
chr8 (455-529)||(6261068-6261141)
chr8 (448-504)||(44077737-44077793)
chr8 (453-527)||(20896185-20896259)
chr8 (455-532)||(22786559-22786636)
chr8 (455-504)||(4834970-4835019)
chr8 (491-532)||(33445840-33445881)
chr8 (491-531)||(35886728-35886768)
chr8 (456-532)||(44132874-44132950)
[»] chr4 (14 HSPs)
chr4 (456-550)||(44015413-44015507)
chr4 (487-531)||(53176854-53176898)
chr4 (455-518)||(29693222-29693285)
chr4 (455-518)||(52673198-52673261)
chr4 (455-517)||(53406489-53406551)
chr4 (472-532)||(30643609-30643669)
chr4 (454-525)||(5052109-5052180)
chr4 (458-529)||(31455897-31455968)
chr4 (455-513)||(46079340-46079398)
chr4 (463-517)||(51853495-51853549)
chr4 (456-522)||(52198372-52198438)
chr4 (455-532)||(23332119-23332196)
chr4 (488-544)||(32513639-32513695)
chr4 (479-535)||(39833257-39833313)
[»] chr6 (4 HSPs)
chr6 (456-545)||(26847141-26847230)
chr6 (416-532)||(28963550-28963667)
chr6 (456-512)||(457683-457739)
chr6 (458-532)||(6139332-6139406)
[»] scaffold1034 (1 HSPs)
scaffold1034 (479-532)||(2724-2777)


Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 25 - 639
Target Start/End: Original strand, 16400685 - 16401307
Alignment:
Q  25 attaattgaaagcgtaaaatttaagagaacgtttctacttttgagtt-tttaacacgtttcttagtacacaagttagcacgaccctataaattaaactct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  16400685 attaattgaaagcgtaaaatttaagagaacgtttctacttttgagttgtttaacatgtgtcttagtacacaagttagcacgaccctataaattaaactct 16400784  T
Q  124 tacttttctatatgcacaattgaaaagtttatttacgcgtgcagacaatcaaatcatttaatgatgtcacctttttagattatcattatcttattcgagt 223  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16400785 tacttttctatatgtacaattgaaaagtgtatttacgcgtgcagacaatcaaatcattttatgatgtcacctttttagattatcattatcttattcgagt 16400884  T
Q  224 caatctttccatcattaattttgcttcagtgctccaaaatgagaccggagatattatttagatgtaaccgtaaatatctattatcatctcgcagtaattt 323  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16400885 caatctttccgtcattaattttgctt-agtgctccaaaatgagaccgtagatattatttagatgtaatcgtaaatatctattatcatctcgcagtaattt 16400983  T
Q  324 tgttgtcgattatgtt--------aacaaataaggttacttattttatagttagagaatctttatatcattctagtcctcgtgatgcaccctcttattta 415  Q
    ||||||||||||||||        |  |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  16400984 tgttgtcgattatgttatgaggcaagtaaataaggttacttattttatagttagaaaatctttatatcatcctagtcctcgtgatgcaccctcttattta 16401083  T
Q  416 ggtttcacttgagtgacattacttttactgatattaatgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaa 515  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16401084 ggtttcacttgagtgacattgcatttactgatattaatgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaa 16401183  T
Q  516 ataattgattaaaagagtgacaaaaacaatatcactgattccttnnnnnnnnnttaacaatgccatcaatatcaataaaaattatatcactcaagtgcaa 615  Q
    |||||||||||||||||||||||||| |||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  16401184 ataattgattaaaagagtgacaaaaataatatcactgattccttaaaaaaaaattaacaatgccatcaatatcaataaaaattatatcactcaagtgcaa 16401283  T
Q  616 ttcctcttaaattatcaatgaaat 639  Q
    ||||||||||||||||||||||||    
T  16401284 ttcctcttaaattatcaatgaaat 16401307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 458 - 511
Target Start/End: Complemental strand, 43712028 - 43711975
Alignment:
Q  458 tttagatgagaaagaatggtggataaataattaaaataaattatttacatgaga 511  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  43712028 tttagatgagaaagaatgttggacaaataattaaaataaattatttagatgaga 43711975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 32832593 - 32832651
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||||| ||||| ||| |||||||||||||||||| ||||||||    
T  32832593 cattttagatgagagagaatgttggatgaatgattaaaataaattatttagatgagaga 32832651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 518
Target Start/End: Complemental strand, 39729077 - 39729014
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaata 518  Q
    |||||||||||||| |||||| || || ||| |||||||||||||||||| |||||||| ||||    
T  39729077 cattttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaata 39729014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 41069673 - 41069731
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||||| || || ||| |||||||||||||||||| ||||||||    
T  41069673 cattttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagaga 41069731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 515
Target Start/End: Original strand, 6752074 - 6752134
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaa 515  Q
    |||||||||||||| |||||| |  || ||| |||||||||||||||||| ||||||||||    
T  6752074 cattttagatgagagagaatgataaatgaatgattaaaataaattatttagatgagagaaa 6752134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 200
Target Start/End: Complemental strand, 36688395 - 36688364
Alignment:
Q  169 caatcaaatcatttaatgatgtcaccttttta 200  Q
    ||||||||||||||||||||||||||||||||    
T  36688395 caatcaaatcatttaatgatgtcaccttttta 36688364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 527
Target Start/End: Original strand, 40204728 - 40204799
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaa 527  Q
    |||||| |||||| |||||| | ||| ||| ||||||||||||||||||  ||| ||| |||||||||||||    
T  40204728 attttacatgagagagaatgatagatgaattattaaaataaattatttaggtgaaagagaataattgattaa 40204799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 2220986 - 2220937
Alignment:
Q  446 atattaatgcattttagatgagaaagaatggtggataaataattaaaata 495  Q
    |||||||||||||||| |||| | ||||  ||||||||||||||||||||    
T  2220986 atattaatgcattttacatgaaagagaacagtggataaataattaaaata 2220937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 45076315 - 45076266
Alignment:
Q  453 tgcattttagatgagaaagaatggtggataaataattaaaataaattatt 502  Q
    ||||||| | |||||||||||||||| |||||||| ||||||||| ||||    
T  45076315 tgcatttcaaatgagaaagaatggtgcataaataactaaaataaaatatt 45076266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 528
Target Start/End: Complemental strand, 8209371 - 8209311
Alignment:
Q  468 aaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaa 528  Q
    ||||||||||  || ||| |||||||||||||||||  |||||||| ||| ||||||||||    
T  8209371 aaagaatggtaaatgaatgattaaaataaattattttgatgagagagaattattgattaaa 8209311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 416 - 532
Target Start/End: Original strand, 3950256 - 3950372
Alignment:
Q  416 ggtttcacttgagtgacattacttttactgatattaatgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaa 515  Q
    ||||||||||| ||||||||||||||  ||| |||  |||||||||||||||| |||||| | ||| ||| |||||||||||||||||  |||| ||| |    
T  3950256 ggtttcacttgggtgacattacttttggtgacattggtgcattttagatgagagagaatgatcgatgaatgattaaaataaattattttgatgaaagaga 3950355  T
Q  516 ataattgattaaaagag 532  Q
    |||||||||||| ||||    
T  3950356 ataattgattaagagag 3950372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 456 - 532
Target Start/End: Original strand, 19431391 - 19431467
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    ||||||||||||| |||||| ||||| ||| |||||||||||||||||| |||||||| ||| |||| |||| ||||    
T  19431391 attttagatgagacagaatgatggatgaatgattaaaataaattatttagatgagagagaatgattggttaagagag 19431467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 448 - 526
Target Start/End: Complemental strand, 34430109 - 34430031
Alignment:
Q  448 attaatgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgatta 526  Q
    |||| ||||||||||||||||||||| | | ||| ||| |||||||||||||||||||   ||||| ||||||||||||    
T  34430109 attagtgcattttagatgagaaagaaagttagatgaatgattaaaataaattatttaccctagagagaataattgatta 34430031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 17923909 - 17923859
Alignment:
Q  463 atgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||| |||||| ||||| |||||||||||||||||||||| ||||||||    
T  17923909 atgagagagaatgttggatgaataattaaaataaattatttagatgagaga 17923859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 19456310 - 19456368
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||||| || ||| || |||||||||||||||||| ||||||||    
T  19456310 cattttagatgagagagaatgatgaatagatgattaaaataaattatttagatgagaga 19456368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 532
Target Start/End: Complemental strand, 49177334 - 49177259
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    ||||||||||||||  ||||  || |||||| |||||||||||||||||| |||||||||||| | || |||||||||    
T  49177334 cattttagatgaga--gaatattgaataaattattaaaataaattatttagatgagagaaaatgaatggttaaaagag 49177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 526
Target Start/End: Original strand, 44448489 - 44448569
Alignment:
Q  446 atattaatgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgatta 526  Q
    |||||| || |||||||||| || |||||| |  || ||| |||||||||||||||||| |||||| ||||| ||||||||    
T  44448489 atattagtgtattttagatgggagagaatgatatatgaatgattaaaataaattatttaaatgagataaaatgattgatta 44448569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 503
Target Start/End: Complemental strand, 26056880 - 26056833
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattattt 503  Q
    ||||||||||||| ||| || | |||||||||||||||||||||||||    
T  26056880 attttagatgagatagagtgatagataaataattaaaataaattattt 26056833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 24671247 - 24671189
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| ||| || || || ||| |||||||||||||||||| ||||||||    
T  24671247 cattttagatgagagagagtgatgaatgaatgattaaaataaattatttaaatgagaga 24671189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 48914985 - 48915043
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||||| || || ||| |||||||||||||||||  ||||||||    
T  48914985 cattttagatgagagagaatgatgaatgaatgattaaaataaattattttgatgagaga 48915043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 48915376 - 48915434
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||||| || || ||| |||||||||||||||||  ||||||||    
T  48915376 cattttagatgagagagaatgatgaatgaatgattaaaataaattattttgatgagaga 48915434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 517
Target Start/End: Original strand, 12136273 - 12136310
Alignment:
Q  480 ataaataattaaaataaattatttacatgagagaaaat 517  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  12136273 ataaataattaaaataaattatttagatgaaagaaaat 12136310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 509
Target Start/End: Complemental strand, 26478652 - 26478599
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatga 509  Q
    ||||||||||||| |||||| || || |||||||||||||||| ||||| ||||    
T  26478652 attttagatgagagagaatgatgaatgaataattaaaataaatcatttaaatga 26478599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 447 - 532
Target Start/End: Original strand, 684992 - 685077
Alignment:
Q  447 tattaatgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    ||||||||||||||||||||||||||||  | ||| ||  |||||||||||||||||| |||||| ||||| ||||||||||||||    
T  684992 tattaatgcattttagatgagaaagaatattagatgaaagattaaaataaattatttagatgagataaaatgattgattaaaagag 685077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 449 - 532
Target Start/End: Original strand, 11369049 - 11369132
Alignment:
Q  449 ttaatgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    ||||| |||||||||||||| |||||| ||||||||| |||||||||||||||||| | |||||||||||| || |||| ||||    
T  11369049 ttaattcattttagatgagagagaatgttggataaatgattaaaataaattatttagacgagagaaaataaatggttaagagag 11369132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 455 - 532
Target Start/End: Complemental strand, 40591106 - 40591029
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    |||||||||||| | |||||| | ||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||    
T  40591106 cattttagatgaaatagaatgttagataaatgattaaaataaattatttagatgaaagagaataattgattaaaagag 40591029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 455 - 550
Target Start/End: Original strand, 30061144 - 30061237
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagagtgacaaaaacaatatcac 550  Q
    ||||||| ||||||||  ||| | |||| || |||||||||||||||||| |||||||||||| ||||||||| |||| || ||||||||| ||||    
T  30061144 cattttaaatgagaaa--atgattgatagatgattaaaataaattatttagatgagagaaaattattgattaacagagagataaaaacaatgtcac 30061237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 549
Target Start/End: Complemental strand, 32204832 - 32204739
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagagtgacaaaaacaatatca 549  Q
    ||||||||||||| |  ||| | ||||||| |||||||||||||||||| |||||||| ||| ||||||| |||||| || |  ||||||||||    
T  32204832 attttagatgagagaagatgatagataaatgattaaaataaattatttatatgagagataatgattgatttaaagagagatatgaacaatatca 32204739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 514
Target Start/End: Original strand, 37685190 - 37685249
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaa 514  Q
    ||||||||| |||| |||||| ||||| ||| |||||||||||||||||| |||||||||    
T  37685190 cattttagacgagagagaatgttggatgaatgattaaaataaattatttagatgagagaa 37685249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 550
Target Start/End: Original strand, 41851274 - 41851337
Alignment:
Q  487 attaaaataaattatttacatgagagaaaataattgattaaaagagtgacaaaaacaatatcac 550  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||| || || ||||||||| ||||    
T  41851274 attaaaataaattatttacattagagagaatgattgattaaaatagagataaaaacaatgtcac 41851337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 2628436 - 2628494
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||||| || |||||| ||||||||||| |||||| ||||||||    
T  2628436 cattttagatgagagagaatgatgaataaatgattaaaataaactatttagatgagaga 2628494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 32279294 - 32279352
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| | |||| || || |||||||||||||||||||||| ||||||||    
T  32279294 cattttagatgagagaaaatgatgaatgaataattaaaataaattatttaaatgagaga 32279352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 33884051 - 33884101
Alignment:
Q  463 atgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||| ||||||||||||  ||||||||||||||||||||| ||||||||    
T  33884051 atgagagagaatggtggatggataattaaaataaattatttagatgagaga 33884101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 504
Target Start/End: Complemental strand, 24833171 - 24833115
Alignment:
Q  448 attaatgcattttagatgagaaagaatggtggataaataattaaaataaattattta 504  Q
    |||| |||||||||||||| | ||||| |||||||| | ||||||||||||||||||    
T  24833171 attagtgcattttagatgaaagagaatagtggataactgattaaaataaattattta 24833115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 501
Target Start/End: Original strand, 33957482 - 33957527
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattat 501  Q
    |||||||||||||||||||| | ||| ||| |||||||||||||||    
T  33957482 attttagatgagaaagaatgatagatgaatgattaaaataaattat 33957527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 42971644 - 42971701
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    ||||||||||||| |||||| |||   ||| |||||||||||||||||| ||||||||    
T  42971644 attttagatgagagagaatgttgggcgaatgattaaaataaattatttagatgagaga 42971701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 470 - 550
Target Start/End: Original strand, 43368501 - 43368581
Alignment:
Q  470 agaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagagtgacaaaaacaatatcac 550  Q
    |||||| ||||| ||| |||||||||||||||||| ||||||   ||| ||||||| | |||| || || |||||||||||    
T  43368501 agaatgatggatgaatgattaaaataaattatttagatgagaatgaattattgatttagagagagataagaacaatatcac 43368581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 33953218 - 33953151
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattga 523  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| ||| |||||    
T  33953218 attttagatgagagagaatggtggatgaataattaaaataaattatttagatgagagagaattattga 33953151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 27554924 - 27554986
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaata 518  Q
    ||||||||||||| | |||| || |||||||||||||||| |||||||| |||||||||||||    
T  27554924 attttagatgagagaaaatgatgaataaataattaaaatagattatttagatgagagaaaata 27554986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 517
Target Start/End: Complemental strand, 22653571 - 22653509
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaat 517  Q
    ||||||||||||||||||||  ||||| ||| ||||||||| |||||||| || |||||||||    
T  22653571 cattttagatgagaaagaataatggatgaatgattaaaatagattatttagataagagaaaat 22653509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 19824674 - 19824617
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    ||||||||||||| |||||| | ||| ||| |||||||||||||||||| ||||||||    
T  19824674 attttagatgagagagaatgttagatgaatgattaaaataaattatttagatgagaga 19824617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 525
Target Start/End: Original strand, 22029851 - 22029920
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgatt 525  Q
    ||||||||||||| |||||| ||||| ||| |||||||||||||||||  |||||| | ||||| |||||    
T  22029851 attttagatgagagagaatgttggatgaatgattaaaataaattatttggatgagatagaataaatgatt 22029920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 504
Target Start/End: Original strand, 18267856 - 18267903
Alignment:
Q  457 ttttagatgagaaagaatggtggataaataattaaaataaattattta 504  Q
    |||||||| ||| |||||| ||||| ||||||||||||||||||||||    
T  18267856 ttttagataagagagaatgatggattaataattaaaataaattattta 18267903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 31882659 - 31882604
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||  ||||| | ||| |||||||||||||||||||||| ||||||||    
T  31882659 attttagatgaga--gaatgtttgatgaataattaaaataaattatttagatgagaga 31882604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 30784298 - 30784250
Alignment:
Q  24 aattaattgaaagcgtaaaatttaagagaacgtttctacttttgagttt 72  Q
    ||||||||||| || |||||||||||| ||  |||||||||||||||||    
T  30784298 aattaattgaatgcataaaatttaagaaaaaatttctacttttgagttt 30784250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 456 - 551
Target Start/End: Complemental strand, 16278862 - 16278767
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagagtgacaaaaacaatatcact 551  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||||  ||| | | ||||||||||||| |||| || || |||||| |||||    
T  16278862 attttagataagaaagaatgatggatgaataattaaaataaattatttaggtgataaagaataattgattaagagagagataagaacaatgtcact 16278767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 444 - 532
Target Start/End: Original strand, 42466947 - 42467034
Alignment:
Q  444 tgatattaatgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    |||||||||||  ||||| |||| |||||||| || || |||||||||||||||||||||| | || ||||||||||| | ||||||||    
T  42466947 tgatattaatgt-ttttacatgaaaaagaatgatgaatgaataattaaaataaattatttagacgaaagaaaataattaactaaaagag 42467034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 10688699 - 10688641
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||||| || || ||| |||||||||||||||||| ||||||||    
T  10688699 cattttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagaga 10688641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 39485470 - 39485528
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||| | ||||| ||| |||||||||||||||||| ||||||||    
T  39485470 cattttagatgagagagaaggttggatgaatgattaaaataaattatttagatgagaga 39485528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 47548927 - 47548869
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||||| || ||  || |||||||||||||||||| ||||||||    
T  47548927 cattttagatgagagagaatgttgaatggatgattaaaataaattatttagatgagaga 47548869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 527
Target Start/End: Original strand, 39488509 - 39488553
Alignment:
Q  483 aataattaaaataaattatttacatgagagaaaataattgattaa 527  Q
    |||||||||||||||||||||| |  ||||||||| |||||||||    
T  39488509 aataattaaaataaattatttaaaaaagagaaaatgattgattaa 39488553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 527
Target Start/End: Original strand, 46348392 - 46348464
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaa 527  Q
    |||||||||||||| |||||| || || ||| ||||| ||||| |||||| |||||||| ||| | |||||||    
T  46348392 cattttagatgagagagaatgatgaatgaattattaagataaactatttaaatgagagagaatgaatgattaa 46348464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 455 - 529
Target Start/End: Complemental strand, 6261141 - 6261068
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaa 529  Q
    |||||||||||||||||||| || ||| ||||||| |||||||||||||| |||||||| ||| |||||||||||    
T  6261141 cattttagatgagaaagaatagttgatgaataattcaaataaattatttagatgagagagaat-attgattaaaa 6261068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 504
Target Start/End: Original strand, 44077737 - 44077793
Alignment:
Q  448 attaatgcattttagatgagaaagaatggtggataaataattaaaataaattattta 504  Q
    ||||||||||||||||||| | ||| || || |||||||||||||||||||||||||    
T  44077737 attaatgcattttagatgaaagagagtgatgaataaataattaaaataaattattta 44077793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 527
Target Start/End: Original strand, 20896185 - 20896259
Alignment:
Q  453 tgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaa 527  Q
    |||||||||||||||| | |||| |  || ||| |||||||||||||||||| |||||||| ||| |||||||||    
T  20896185 tgcattttagatgagagataatgatatatgaatgattaaaataaattatttagatgagagagaatgattgattaa 20896259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 532
Target Start/End: Complemental strand, 22786636 - 22786559
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    |||||||||||| |||||||| |  ||||||||||||| ||||||||||| |||| ||| ||| | || |||||||||    
T  22786636 cattttagatgaaaaagaatgataaataaataattaaagtaaattatttaaatgaaagagaatgaatggttaaaagag 22786559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 504
Target Start/End: Original strand, 4834970 - 4835019
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattattta 504  Q
    |||||||||||||| |||||| || || ||| ||||||||||||||||||    
T  4834970 cattttagatgagagagaatgatgaatgaatgattaaaataaattattta 4835019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 33445840 - 33445881
Alignment:
Q  491 aaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    |||||||||||||| |||||||||||| ||||||||| ||||    
T  33445840 aaataaattatttagatgagagaaaatgattgattaatagag 33445881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 491 - 531
Target Start/End: Original strand, 35886728 - 35886768
Alignment:
Q  491 aaataaattatttacatgagagaaaataattgattaaaaga 531  Q
    |||||||||||||| |||| ||||||| |||||||||||||    
T  35886728 aaataaattatttagatgaaagaaaatgattgattaaaaga 35886768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 532
Target Start/End: Original strand, 44132874 - 44132950
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    ||||||||||||| | |||| | ||| ||| |||||||||||||||||  |||||||| ||| |||| |||| ||||    
T  44132874 attttagatgagagataatgatagatgaatgattaaaataaattattttgatgagagagaattattggttaagagag 44132950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 456 - 550
Target Start/End: Original strand, 44015413 - 44015507
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagagtgacaaaaacaatatcac 550  Q
    |||||||||||||||||||| | ||| ||| |||||||||||||||||| |||||||| ||  ||||||||| |||| || || |||||| ||||    
T  44015413 attttagatgagaaagaatgatagatgaatgattaaaataaattatttagatgagagataaagattgattaagagagagataagaacaatgtcac 44015507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 531
Target Start/End: Complemental strand, 53176898 - 53176854
Alignment:
Q  487 attaaaataaattatttacatgagagaaaataattgattaaaaga 531  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    
T  53176898 attaaaataaattatttagatgagagaaaatgattgattaaaaga 53176854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 518
Target Start/End: Complemental strand, 29693285 - 29693222
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaata 518  Q
    |||||||||||||| |||||| |  ||||||||||||||||||||||||| || ||||| ||||    
T  29693285 cattttagatgagagagaatgataaataaataattaaaataaattatttaaataagagataata 29693222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 52673198 - 52673261
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaata 518  Q
    |||||||||||||| |||||| || || |||||||||||||||||||||  |||||||| ||||    
T  52673198 cattttagatgagagagaatgatgaatgaataattaaaataaattattttgatgagagagaata 52673261  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 517
Target Start/End: Original strand, 53406489 - 53406551
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaat 517  Q
    |||||||||||| | | |||| || ||||||||||||||||||||||||| || |||||||||    
T  53406489 cattttagatgaaagaaaatgatgaataaataattaaaataaattatttagataagagaaaat 53406551  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 532
Target Start/End: Original strand, 30643609 - 30643669
Alignment:
Q  472 aatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    |||| ||||| ||| |||||||||||||||||| |||||||| ||| ||||||||| ||||    
T  30643609 aatgatggatgaatgattaaaataaattatttagatgagagagaatgattgattaagagag 30643669  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 525
Target Start/End: Complemental strand, 5052180 - 5052109
Alignment:
Q  454 gcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgatt 525  Q
    |||||||| |||||| |||||| |  |||||| |||||||||||||||||  |||||||| ||| |||||||    
T  5052180 gcattttaaatgagagagaatgataaataaatgattaaaataaattattttgatgagagagaatgattgatt 5052109  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 529
Target Start/End: Original strand, 31455897 - 31455968
Alignment:
Q  458 tttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaa 529  Q
    ||||||||| | ||||||  | || ||| |||||||||||||||||| |||||||| | |||||||||||||    
T  31455897 tttagatgaaagagaatgaagaatgaatgattaaaataaattatttagatgagagagattaattgattaaaa 31455968  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 46079340 - 46079398
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagaga 513  Q
    |||||||||||||| |||||| |  || ||| |||||||||||||||||| ||||||||    
T  46079340 cattttagatgagagagaatgatcaatgaatgattaaaataaattatttagatgagaga 46079398  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 463 - 517
Target Start/End: Complemental strand, 51853549 - 51853495
Alignment:
Q  463 atgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaat 517  Q
    |||||| |||||| || || |||||||||||||| ||||||| ||||||||||||    
T  51853549 atgagagagaatgttgaatgaataattaaaataacttatttagatgagagaaaat 51853495  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 522
Target Start/End: Complemental strand, 52198438 - 52198372
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattg 522  Q
    ||||||||||||| | |||| | ||||||| |||||||||||||||||  |||||||| ||| ||||    
T  52198438 attttagatgagagataatgatagataaatgattaaaataaattattttgatgagagataattattg 52198372  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 532
Target Start/End: Complemental strand, 23332196 - 23332119
Alignment:
Q  455 cattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    |||||||||||||| |||||| | ||| ||| |||||||||  ||||||| |||||||| ||| | ||||| ||||||    
T  23332196 cattttagatgagagagaatgttagatgaatgattaaaatatgttatttaaatgagagagaatgaatgatttaaagag 23332119  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 32513695 - 32513639
Alignment:
Q  488 ttaaaataaattatttacatgagagaaaataattgattaaaagagtgacaaaaacaa 544  Q
    ||||||||||||||||| ||| ||||||||||||  ||| ||||| || ||||||||    
T  32513695 ttaaaataaattatttaaatgtgagaaaataattagttataagagagataaaaacaa 32513639  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 535
Target Start/End: Complemental strand, 39833313 - 39833257
Alignment:
Q  479 gataaataattaaaataaattatttacatgagagaaaataattgattaaaagagtga 535  Q
    ||||||||||| |||||||||||||  |||||| | ||| ||| |||||||||||||    
T  39833313 gataaataattgaaataaattattttgatgagaaagaatcattaattaaaagagtga 39833257  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 456 - 545
Target Start/End: Complemental strand, 26847230 - 26847141
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagagtgacaaaaacaat 545  Q
    ||||||||||||| |||||| | ||| ||| | |||||||||||||||| || ||||| |||||||||||||||||| || | |||||||    
T  26847230 attttagatgagagagaatgatagatgaatgagtaaaataaattatttagataagagataataattgattaaaagagagatataaacaat 26847141  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 532
Target Start/End: Original strand, 28963550 - 28963667
Alignment:
Q  416 ggtttcacttgagtgacattacttttac-tgatattaatgcattttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaa 514  Q
    ||||||||||||||||||||| ||||   ||| |||| |||||||||||||||| ||||||  | || ||| |||||||||| ||||||  ||||||||     
T  28963550 ggtttcacttgagtgacattagtttttggtgacattagtgcattttagatgagagagaatgaagaatgaatgattaaaataacttattttgatgagagag 28963649  T
Q  515 aataattgattaaaagag 532  Q
    ||| || |||||| ||||    
T  28963650 aatgatcgattaagagag 28963667  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 457739 - 457683
Alignment:
Q  456 attttagatgagaaagaatggtggataaataattaaaataaattatttacatgagag 512  Q
    ||||||||||||| |||||| ||||| ||| |||||||||||||||||| |||||||    
T  457739 attttagatgagagagaatgatggatgaatgattaaaataaattatttagatgagag 457683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 532
Target Start/End: Complemental strand, 6139406 - 6139332
Alignment:
Q  458 tttagatgagaaagaatggtggataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    |||| |||||| |||||| | || |||| |||||||||||||||||| |||||||| ||| | || |||||||||    
T  6139406 tttaaatgagagagaatgttagacaaatgattaaaataaattatttagatgagagagaatgaatggttaaaagag 6139332  T

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Target: scaffold1034 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 2777 - 2724
Alignment:
Q  479 gataaataattaaaataaattatttacatgagagaaaataattgattaaaagag 532  Q
    |||||||||||||||||||||||||  |||||| | ||||||||||||| ||||    
T  2777 gataaataattaaaataaattattttaatgagaaataataattgattaagagag 2724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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