View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13802_low_20 (Length: 354)
Name: NF13802_low_20
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 24 - 339
Target Start/End: Original strand, 23535029 - 23535343
Alignment:
| Q |
24 |
ataggaccacaggtgcaggaggtcaatgacannnnnnnnttcagttgatctttcacatagatgagtaggcacacccacacacaacgctatcaaatataat |
123 |
Q |
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| T |
23535029 |
ataggaccacaggtgcaggaggtcaatgacaggggggg-ttcagttgatctttcacatagatgagtaggcacacccacacacaacgctatcaaatataat |
23535127 |
T |
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| Q |
124 |
tggtctattgaaccagaactacatgtgatacccacctaaagaaatcaattctatgttcaacactcttctgtacacttgtcatagggtagtttaagctagc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23535128 |
tggtctattgaaccagaactacatgtgatacccacctaaagaaatcaattctatgttcaacactcttctgtacacttgtcatagggtagtttaagctagc |
23535227 |
T |
|
| Q |
224 |
caacaatgcaagttgaaattaaagggattcatgtacaaccttccaccatcaagtgggaagagtcctcttctcattatggcaactcaacaaggaaattatg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23535228 |
caacaatgcaagttgaaattaaagggattcatgtacaaccttccaccatcaagtgggaagagtcctcttctcattatggcaactcaacaaggaaattatg |
23535327 |
T |
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| Q |
324 |
tatttggcgtcaaaag |
339 |
Q |
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|||||||||||||||| |
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| T |
23535328 |
tatttggcgtcaaaag |
23535343 |
T |
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