View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13802_low_31 (Length: 257)

Name: NF13802_low_31
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13802_low_31
NF13802_low_31
[»] chr3 (4 HSPs)
chr3 (16-237)||(29214647-29214868)
chr3 (59-126)||(32208072-32208139)
chr3 (60-126)||(36924412-36924477)
chr3 (63-155)||(52041516-52041608)
[»] chr2 (1 HSPs)
chr2 (59-126)||(879469-879536)
[»] chr7 (2 HSPs)
chr7 (59-126)||(47992414-47992481)
chr7 (59-125)||(9639275-9639341)
[»] chr8 (2 HSPs)
chr8 (59-126)||(105459-105528)
chr8 (59-128)||(42192870-42192939)
[»] chr1 (2 HSPs)
chr1 (71-126)||(50746512-50746567)
chr1 (64-124)||(43325438-43325497)
[»] chr4 (1 HSPs)
chr4 (59-125)||(13597904-13597970)
[»] scaffold0172 (1 HSPs)
scaffold0172 (59-104)||(19454-19499)
[»] chr6 (1 HSPs)
chr6 (59-104)||(30438100-30438144)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 29214868 - 29214647
Alignment:
Q  16 atagtttaagaaatcaatggtagtaacttttgcatgtattatcattactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattt 115  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29214868 atagtttaagcaattaatggtagtaacttttgcatgtatgatcattactttttcatatatttgacttatgttttcaagagaatatttctatctatgattt 29214769  T
Q  116 tcttaaacaatattttaagatactttttagcaaaaccctaannnnnnnnagataagactctgcttgcatcctc-acatgtcatgaagtcccgtcttatac 214  Q
    ||||||||||| |||||||| ||||||||||||||||||||        ||||||| || ||||||||||||| |||||||||||||||||||||||||     
T  29214768 tcttaaacaatgttttaagacactttttagcaaaaccctaa-tttttttagataagtctatgcttgcatcctcaacatgtcatgaagtcccgtcttatag 29214670  T
Q  215 taatgactaatgaggtgctcgat 237  Q
    |||||||||||||||||||||||    
T  29214669 taatgactaatgaggtgctcgat 29214647  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 32208139 - 32208072
Alignment:
Q  59 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 126  Q
    ||||||||||||||||||||||||||||||| || | ||||||| ||| |||||||||||||||||||    
T  32208139 attactttttcatatgtttgacttatgtttttaaaaaaatatttttatttatgattttcttaaacaat 32208072  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 36924412 - 36924477
Alignment:
Q  60 ttactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 126  Q
    ||||||||| |||||||||| ||||||||| |||||||||||| ||| |||||||| ||||||||||    
T  36924412 ttacttttttatatgtttgaattatgtttttaagagaatatttttat-tatgatttccttaaacaat 36924477  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 52041608 - 52041516
Alignment:
Q  63 ctttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaatat-tttaagatactttttagcaaaacccta 155  Q
    ||||||||||||||||| |||||||||  ||||||||||||||| |||| |||  ||||||||| | |||| || |||| ||||||| ||||||    
T  52041608 ctttttcatatgtttgatttatgtttt-gagagaatatttctatttatggtttcattaaacaatgtctttaggacacttgttagcaagacccta 52041516  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 879536 - 879469
Alignment:
Q  59 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 126  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||    
T  879536 attactttttcatatgtttgacttatgttttcaaaagaatatttctatttatggtttgcttaaacaat 879469  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 47992481 - 47992414
Alignment:
Q  59 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 126  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||| ||| |||||||| ||||||||||    
T  47992481 attactttttcatatatttaacttatgttttcaaaagaatatttatatttatgatttccttaaacaat 47992414  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 9639341 - 9639275
Alignment:
Q  59 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaa 125  Q
    ||||||||||||||||||||| || |||||||||||||||||||| || |||| |||  ||||||||    
T  9639341 attactttttcatatgtttgatttgtgttttcaagagaatatttcgatttatggtttctttaaacaa 9639275  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 105459 - 105528
Alignment:
Q  59 attactttttcatatgtttgacttatgttttcaagagaata--tttctatctatgattttcttaaacaat 126  Q
    |||| ||||||||||||||||||| ||||||||||||||||  ||| ||| |||||||||||||||||||    
T  105459 attattttttcatatgtttgacttgtgttttcaagagaatatttttttatttatgattttcttaaacaat 105528  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 42192870 - 42192939
Alignment:
Q  59 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaatat 128  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||| ||| ||| ||||  ||||| |||||    
T  42192870 attactttttcatatatttgacttatattttcaagaaaatatttatatttattatttctttaaataatat 42192939  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 50746512 - 50746567
Alignment:
Q  71 tatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaat 126  Q
    |||||||||||||||||||||||| || |||||||| |||||||| ||||||||||    
T  50746512 tatgtttgacttatgttttcaagaaaacatttctatttatgatttccttaaacaat 50746567  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 43325438 - 43325497
Alignment:
Q  64 tttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaaca 124  Q
    |||||||||||||||||| |||||||||||||||||||| ||| |||| ||| ||||||||    
T  43325438 tttttcatatgtttgact-atgttttcaagagaatatttttatttatggtttccttaaaca 43325497  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 13597904 - 13597970
Alignment:
Q  59 attactttttcatatgtttgacttatgttttcaagagaatatttctatctatgattttcttaaacaa 125  Q
    ||||||||||||||||||||| || |||||||||||||||||||| || |||| |||  ||||||||    
T  13597904 attactttttcatatgtttgatttgtgttttcaagagaatatttcgatttatggtttctttaaacaa 13597970  T

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Target: scaffold0172 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 19499 - 19454
Alignment:
Q  59 attactttttcatatgtttgacttatgttttcaagagaatatttct 104  Q
    ||||||||| ||| |||||||||||||||||||||| || ||||||    
T  19499 attacttttacatgtgtttgacttatgttttcaagataaaatttct 19454  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 30438100 - 30438144
Alignment:
Q  59 attactttttcatatgtttgacttatgttttcaagagaatatttct 104  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||    
T  30438100 attactttttcatatgtttgatttatg-tttcaagaaaatatttct 30438144  T

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