View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13802_low_4 (Length: 582)

Name: NF13802_low_4
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13802_low_4
NF13802_low_4
[»] chr2 (8 HSPs)
chr2 (1-582)||(6915289-6915870)
chr2 (449-547)||(10543505-10543603)
chr2 (449-547)||(10471307-10471405)
chr2 (449-547)||(28106207-28106305)
chr2 (467-547)||(27966389-27966469)
chr2 (449-547)||(10859023-10859121)
chr2 (468-530)||(9081351-9081413)
chr2 (476-540)||(10505487-10505551)
[»] chr7 (7 HSPs)
chr7 (88-192)||(15040241-15040345)
chr7 (11-84)||(15040064-15040137)
chr7 (449-547)||(15044800-15044898)
chr7 (362-452)||(15043971-15044061)
chr7 (197-252)||(15041840-15041895)
chr7 (302-364)||(15043792-15043854)
chr7 (549-582)||(15045570-15045603)
[»] chr8 (2 HSPs)
chr8 (39-108)||(43895529-43895598)
chr8 (39-108)||(44305953-44306022)
[»] chr5 (2 HSPs)
chr5 (168-246)||(35856854-35856932)
chr5 (449-547)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 6915870 - 6915289
Alignment:
Q  1 aatgattgtttgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915870 aatgattgtttgcccactctctgggtccaagctaacacgaaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatct 6915771  T
Q  101 tttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgccggatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6915770 tttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaatgtatcgctggatg 6915671  T
Q  201 cacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcattcatctcattagaatgcatctcaactaagcgaggaaccttaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  6915670 cacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaatgtcgttcatctcattagaatgcatctgaactaagcgaggaaccttaat 6915571  T
Q  301 tttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgctccaac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6915570 tttctttccagtgctaacattaacaataaaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgctccaac 6915471  T
Q  401 ttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcg 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915470 ttgaaagccaatgctacaagaggcccatcgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcg 6915371  T
Q  501 gacaaggcaaataagtaactacaccatccagaagtggttgtacccccgtgtttttgacagcactacccatgaataccggtat 582  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915370 gacaaggcaaataactaactacaccatccagaagtggttgtacccccgtgtttttgacagcactacccatgaataccggtat 6915289  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 547
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  449 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 547  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 547
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  449 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 547  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 547
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  449 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 547  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 467 - 547
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  467 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 547  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 449 - 547
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  449 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 547  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 530
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  468 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 530  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 540
Target Start/End: Original strand, 10505487 - 10505551
Alignment:
Q  476 agagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttg 540  Q
    ||||||||||||||| ||||| | ||||| ||||||||| |||  |||||||||| |||| ||||    
T  10505487 agagcataattactagcttcagttggacacggcaaataattaagcacaccatccaaaagtagttg 10505551  T

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Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 88 - 192
Target Start/End: Original strand, 15040241 - 15040345
Alignment:
Q  88 ccctccagaatcttttgagactggctgtacagctaatgacatcacgggctcaggaacattcatagaagtcattgtgtatttaaccgacccatcagtaaat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||| ||||||||||||||     
T  15040241 ccctccagaatcttttgagactggctgtacagctaatgacatcacaggctcaggaacactcattgaagtcattgtatatttaacagacccatcagtaaaa 15040340  T
Q  188 gtatc 192  Q
    |||||    
T  15040341 gtatc 15040345  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 15040064 - 15040137
Alignment:
Q  11 tgcccactctctgggtccaagctaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 84  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15040064 tgcccactctctgggtccaagccaacacggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaa 15040137  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 449 - 547
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  449 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 547  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 452
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
Q  362 cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 452  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043971 cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 15041840 - 15041895
Alignment:
Q  197 gatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctcttcaat 252  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  15041840 gatgcacaatcaacaccaaatacagcaactatttggccagcatgagcctcatcaat 15041895  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 15043792 - 15043854
Alignment:
Q  302 ttctttccagtgctaacattaacaataaaatcacccttccgaatgacgccctcataaactctt 364  Q
    ||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  15043792 ttcttgccagtgttaacattaataatgaaatcacccttccgaatgacgccctcataaattctt 15043854  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 549 - 582
Target Start/End: Original strand, 15045570 - 15045603
Alignment:
Q  549 tgtttttgacagcactacccatgaataccggtat 582  Q
    ||||||||| ||||||||||||||||||||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtat 15045603  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 43895529 - 43895598
Alignment:
Q  39 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 108  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  43895529 ggaaagtaggatcctttctttgaaaaccattcaaagcagttgaaaattgccctccagaatcttttgagac 43895598  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 44305953 - 44306022
Alignment:
Q  39 ggaaagtaggatcctctctttggaagcggttcaaagcttttgaaaatttccctccagaatcttttgagac 108  Q
    ||||||||||||||| |||||| || |  ||||||||  ||||||||| |||||||||||||||||||||    
T  44305953 ggaaagtaggatcctttctttgaaaaccattcaaagcacttgaaaattgccctccagaatcttttgagac 44306022  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 35856932 - 35856854
Alignment:
Q  168 taaccgacccatcagtaaatgtatcgccggatgcacaatcaacaccaaatacagcaactatttggccagcatgggcctc 246  Q
    |||| ||||||||||||||||| || || | ||||||||||||| || ||||| |||| ||||| |||||||| |||||    
T  35856932 taacagacccatcagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctc 35856854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 547
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  449 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 547  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

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