View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13802_low_42 (Length: 223)
Name: NF13802_low_42
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 11807107 - 11806913
Alignment:
| Q |
18 |
aaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatcctttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11807107 |
aaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggagcttataggtatcctttt |
11807008 |
T |
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| Q |
118 |
ccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgccaggacctattgatacttggaatgagatattcttgga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
11807007 |
ccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgccaggacctattgatacttggaatgagatttttttgga |
11806913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 44248181 - 44248004
Alignment:
| Q |
26 |
aacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgc |
125 |
Q |
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| T |
44248181 |
aacaaattggattaaatttggaggtgcttgatataacaaagttggcattattgagaccagatggtcatgcaggagcttatatgaatccttttccatttgc |
44248082 |
T |
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| Q |
126 |
taaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgccaggacctattgatacttggaatgagat |
203 |
Q |
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| T |
44248081 |
taaaagggttccaaagaatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatatttggaatgagat |
44248004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 15284370 - 15284565
Alignment:
| Q |
17 |
caaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttt |
116 |
Q |
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||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| |
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| T |
15284370 |
caaaagctaaacaatttggattaaatttagaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgctggtgcttatatgaatccttt |
15284469 |
T |
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| Q |
117 |
tccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgccaggacctattgatacttggaatgagatattcttgga |
212 |
Q |
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||||||||| || | ||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||| |
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| T |
15284470 |
tccatttgcaaatggagttccaaaatatgtacaaaatgattgtgttcattggtgcttgccaggacctatagatacttggaatgagattttgttgga |
15284565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 15287503 - 15287359
Alignment:
| Q |
59 |
taacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattg |
158 |
Q |
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|||| ||||||||||| |||||||||||||||||| ||||| |||| | | |||||||||||||||| || | ||||||| |||||||||| ||||| |
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| T |
15287503 |
taactaaattggcattattgagaccagatggtcatccaggtccttacatgaatccttttccatttgcaaatggagttccaaaatatgtacaaaatgattg |
15287404 |
T |
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| Q |
159 |
tactcattggtgcttgccaggacctattgatacttggaatgagat |
203 |
Q |
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| T |
15287403 |
tgttcattggtgcttgccaggacctatagatacttggaatgagat |
15287359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 203
Target Start/End: Original strand, 15262929 - 15263067
Alignment:
| Q |
65 |
aattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattgtactca |
164 |
Q |
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||||||||||||||||||||||||||||| |||||||||| | | |||||||||| || || || |||||||| |||| ||||| |||||| ||| |
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| T |
15262929 |
aattggcattgttgagaccagatggtcatccaggtgcttacatgaatccttttccgttcgcgaacggtgttccaaagtatgtgcaaaatgattgtgttca |
15263028 |
T |
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| Q |
165 |
ttggtgcttgccaggacctattgatacttggaatgagat |
203 |
Q |
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|||||| ||||| |||||||| ||||||||||||||||| |
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| T |
15263029 |
ttggtgtttgcctggacctatagatacttggaatgagat |
15263067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 15256839 - 15256766
Alignment:
| Q |
52 |
cttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgc |
125 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||| |
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| T |
15256839 |
cttgatgtaactaaattggcattgttgagaccagatggtcatccaggtccttatatgtacccttttccatttgc |
15256766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 15265357 - 15265210
Alignment:
| Q |
59 |
taacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatccttttccatttgctaaaacaattccaaagaatgtacaaaacgattg |
158 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||| ||||| |||||| | ||||||||||||| ||| ||| | | |||| ||||| ||||| |
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| T |
15265357 |
taacaaaattggctttgttaagaccagatggtcatccaggtccttatatgaatccttttccattctttaatggggttcaagaacatgtgcaaaatgattg |
15265258 |
T |
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| Q |
159 |
tactcattggtgcttgccaggacctattgatacttggaatgagatatt |
206 |
Q |
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| T |
15265257 |
tgttcattggtgtttgcctggaccaattgatacatggaatgagatatt |
15265210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 51383554 - 51383750
Alignment:
| Q |
16 |
tcaaaatctaaacaagttggattaaatttgaaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggtgcttataggtatcctt |
115 |
Q |
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|||||| || ||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || || | | |||||| |
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| T |
51383554 |
tcaaaagctgaacaattgggatttaatttggaggtgcttgatataacaaaattggcattgttgagaccagatggtcatgcaggagcctacatgaatcctt |
51383653 |
T |
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| Q |
116 |
ttccatttgctaaaacaattccaaagaatgtacaaaacgattgtactcattggtgcttgccaggacctattgatacttggaatgagatattcttgga |
212 |
Q |
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||||||||||||| |||||||||| |||||||||| |||||| ||||||||| |||||||||||||| || |||||||||||||| || ||||| |
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| T |
51383654 |
ttccatttgctaatggaattccaaagtatgtacaaaatgattgtgttcattggtgtttgccaggacctatagacacttggaatgagatttttttgga |
51383750 |
T |
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