View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13802_low_5 (Length: 581)

Name: NF13802_low_5
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13802_low_5
NF13802_low_5
[»] chr6 (11 HSPs)
chr6 (25-564)||(33121005-33121543)
chr6 (117-262)||(32134018-32134164)
chr6 (139-274)||(5611112-5611247)
chr6 (140-262)||(2470347-2470469)
chr6 (142-202)||(27082309-27082369)
chr6 (144-195)||(8636806-8636857)
chr6 (147-262)||(19659610-19659724)
chr6 (137-195)||(31223188-31223247)
chr6 (147-280)||(227336-227471)
chr6 (141-244)||(17345855-17345958)
chr6 (213-251)||(31223253-31223291)
[»] chr2 (30 HSPs)
chr2 (113-262)||(42251575-42251725)
chr2 (153-261)||(40346717-40346825)
chr2 (147-237)||(41436328-41436418)
chr2 (147-259)||(18717853-18717965)
chr2 (137-244)||(31904236-31904342)
chr2 (176-262)||(23453377-23453463)
chr2 (113-262)||(42551958-42552106)
chr2 (137-289)||(13717171-13717322)
chr2 (147-259)||(40574141-40574253)
chr2 (113-259)||(13738393-13738540)
chr2 (141-243)||(14953021-14953123)
chr2 (136-261)||(17641166-17641291)
chr2 (142-234)||(4978775-4978867)
chr2 (142-234)||(4996683-4996775)
chr2 (147-234)||(28331277-28331364)
chr2 (209-263)||(36087408-36087462)
chr2 (142-223)||(6315885-6315966)
chr2 (157-251)||(7932897-7932991)
chr2 (141-243)||(18857431-18857533)
chr2 (169-223)||(43681305-43681359)
chr2 (147-263)||(4557574-4557691)
chr2 (169-261)||(1004771-1004862)
chr2 (153-237)||(9021482-9021566)
chr2 (147-243)||(29526315-29526411)
chr2 (110-232)||(8580477-8580600)
chr2 (147-242)||(27896466-27896561)
chr2 (209-243)||(7669194-7669228)
chr2 (209-262)||(3689614-3689667)
chr2 (147-244)||(38024194-38024290)
chr2 (142-242)||(43131774-43131874)
[»] chr5 (14 HSPs)
chr5 (147-252)||(27544592-27544697)
chr5 (113-264)||(22293952-22294104)
chr5 (142-264)||(41645032-41645152)
chr5 (169-280)||(30293800-30293911)
chr5 (142-261)||(36482050-36482168)
chr5 (114-262)||(11815880-11816029)
chr5 (142-259)||(30840596-30840712)
chr5 (141-191)||(41175393-41175443)
chr5 (147-284)||(6646291-6646428)
chr5 (137-237)||(8151815-8151918)
chr5 (157-243)||(7718502-7718589)
chr5 (213-264)||(34346951-34347002)
chr5 (157-198)||(26402066-26402107)
chr5 (169-237)||(27365991-27366059)
[»] chr8 (27 HSPs)
chr8 (147-262)||(1342325-1342439)
chr8 (142-264)||(10029160-10029282)
chr8 (115-243)||(29030422-29030554)
chr8 (140-250)||(32881109-32881219)
chr8 (113-261)||(41726864-41727013)
chr8 (144-263)||(44648932-44649051)
chr8 (137-263)||(11150916-11151041)
chr8 (137-261)||(35901412-35901536)
chr8 (147-261)||(18200677-18200791)
chr8 (112-244)||(18647474-18647606)
chr8 (113-266)||(31330968-31331123)
chr8 (157-263)||(6270144-6270249)
chr8 (141-263)||(13873694-13873816)
chr8 (153-242)||(42361529-42361618)
chr8 (147-263)||(600375-600491)
chr8 (142-243)||(23425277-23425382)
chr8 (152-262)||(27506943-27507051)
chr8 (113-251)||(43917555-43917694)
chr8 (157-262)||(3347506-3347610)
chr8 (137-259)||(20542380-20542502)
chr8 (152-223)||(17720212-17720283)
chr8 (177-259)||(2768559-2768641)
chr8 (137-195)||(23725687-23725745)
chr8 (147-280)||(40489853-40489985)
chr8 (152-243)||(3137408-3137499)
chr8 (142-244)||(547060-547166)
chr8 (216-252)||(33621438-33621474)
[»] chr4 (22 HSPs)
chr4 (137-263)||(27284065-27284191)
chr4 (148-289)||(22019607-22019748)
chr4 (141-261)||(12076424-12076544)
chr4 (142-261)||(20775070-20775189)
chr4 (115-263)||(13967814-13967964)
chr4 (142-262)||(16341097-16341217)
chr4 (147-263)||(12094961-12095077)
chr4 (140-262)||(27133545-27133667)
chr4 (147-263)||(31991452-31991568)
chr4 (137-259)||(2824814-2824936)
chr4 (116-223)||(19480508-19480616)
chr4 (169-261)||(28176801-28176892)
chr4 (139-244)||(7437842-7437947)
chr4 (177-250)||(22611904-22611977)
chr4 (172-241)||(31861444-31861513)
chr4 (146-243)||(21755875-21755974)
chr4 (163-263)||(31089779-31089878)
chr4 (157-252)||(55126783-55126879)
chr4 (209-263)||(31089510-31089564)
chr4 (137-223)||(39810737-39810822)
chr4 (137-191)||(52837333-52837387)
chr4 (183-243)||(37183077-37183137)
[»] chr1 (22 HSPs)
chr1 (142-260)||(30941466-30941584)
chr1 (113-262)||(33148126-33148275)
chr1 (147-263)||(26829495-26829611)
chr1 (147-287)||(8001717-8001857)
chr1 (177-252)||(48579929-48580004)
chr1 (137-263)||(46295865-46295991)
chr1 (157-290)||(11449073-11449206)
chr1 (142-250)||(30109224-30109333)
chr1 (164-252)||(10226467-10226555)
chr1 (147-262)||(5069500-5069614)
chr1 (137-244)||(17169283-17169390)
chr1 (157-284)||(27688492-27688619)
chr1 (140-262)||(13969094-13969216)
chr1 (153-261)||(50015771-50015879)
chr1 (144-195)||(34347572-34347623)
chr1 (142-191)||(3529109-3529158)
chr1 (142-243)||(5069701-5069802)
chr1 (158-211)||(40430824-40430877)
chr1 (156-280)||(34382610-34382733)
chr1 (212-262)||(39993446-39993496)
chr1 (193-241)||(763185-763233)
chr1 (114-195)||(38597446-38597531)
[»] chr3 (22 HSPs)
chr3 (147-263)||(38359050-38359166)
chr3 (147-280)||(50958863-50958996)
chr3 (114-243)||(48338782-48338912)
chr3 (138-251)||(53818820-53818932)
chr3 (147-251)||(55446736-55446839)
chr3 (116-261)||(44698189-44698335)
chr3 (140-237)||(29032408-29032505)
chr3 (147-232)||(31494030-31494115)
chr3 (137-280)||(6785771-6785915)
chr3 (129-252)||(11676741-11676865)
chr3 (130-263)||(28709560-28709693)
chr3 (147-243)||(47334863-47334959)
chr3 (155-262)||(4020109-4020216)
chr3 (137-262)||(635700-635825)
chr3 (147-244)||(49261783-49261880)
chr3 (178-250)||(8326171-8326243)
chr3 (142-242)||(34145920-34146019)
chr3 (114-262)||(1711919-1712068)
chr3 (147-223)||(4128727-4128803)
chr3 (114-244)||(49543174-49543305)
chr3 (142-243)||(25319461-25319562)
chr3 (205-237)||(31904734-31904766)
[»] chr7 (24 HSPs)
chr7 (142-261)||(1309720-1309839)
chr7 (157-287)||(8896568-8896698)
chr7 (147-250)||(43626350-43626453)
chr7 (114-250)||(23142660-23142797)
chr7 (119-264)||(37928274-37928420)
chr7 (115-237)||(16979912-16980035)
chr7 (141-242)||(31487725-31487826)
chr7 (144-237)||(34993148-34993241)
chr7 (169-243)||(31850762-31850836)
chr7 (157-242)||(8746149-8746234)
chr7 (141-259)||(16685728-16685848)
chr7 (141-259)||(17659964-17660084)
chr7 (112-221)||(30027931-30028041)
chr7 (147-284)||(43118809-43118946)
chr7 (208-263)||(34993092-34993147)
chr7 (209-251)||(1554025-1554067)
chr7 (115-259)||(19676965-19677110)
chr7 (152-261)||(25530541-25530650)
chr7 (147-197)||(1521261-1521311)
chr7 (113-243)||(12810161-12810291)
chr7 (147-261)||(42888306-42888420)
chr7 (142-191)||(22931924-22931973)
chr7 (147-240)||(27235256-27235349)
chr7 (159-223)||(23080659-23080723)
[»] scaffold0079 (1 HSPs)
scaffold0079 (142-262)||(51644-51764)
[»] scaffold0036 (1 HSPs)
scaffold0036 (177-280)||(36565-36668)
[»] scaffold0002 (1 HSPs)
scaffold0002 (114-264)||(120638-120789)
[»] scaffold0204 (1 HSPs)
scaffold0204 (138-243)||(15380-15485)


Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 25 - 564
Target Start/End: Complemental strand, 33121543 - 33121005
Alignment:
Q  25 taccaaaatattactggccaacaatctcgatatcaaggtttctatttagagaaatgattagttttcttaattagatagtagaaaatagtaggagaatgct 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33121543 taccaaaatattactggccaacaatctcgatatcaaggtttctatttagagaaatgattagttttcttaattagatagtagaaaatagtaggagaatgct 33121444  T
Q  125 aactagtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttc 224  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  33121443 aactagtgttctagggtattgattaaacataaaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgataaaaaataacatcttatatttt 33121344  T
Q  225 taagacaaaatttttatttgaagattccctaaccattgctttaaaggcactggttaacaaaactcaaaatatagtataagtagtttcgaaaacactgcat 324  Q
     ||||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  33121343 caagacaaaaattttatttgaaaatttcttaaccattactttaaaggcactggttaacaaaacccaaaatatagtataagtagtttcgaaaacaccgcat 33121244  T
Q  325 catagcttcaagacgttgagattacatccaatttgattttaattgaaatcaattagtttattaatgataactaatccaatctaagatcccattttaggta 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33121243 catagcttcaagacgttgagattacatccaatttgattttaattgaaatcaattagtttattaatgataactaatccaatctaagatccaattttaggta 33121144  T
Q  425 aagcataacgataattcttgttacacatactattgggacagatggagattcagattcagacagaacaaaagcttcaacggttgaatatatttgaacctat 524  Q
    ||||||||| ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33121143 aagcataacaataattcttgttacacatactgttgggacatttggagattcagattcagacagaacaaaagcttcaacggttgaatatatttgaacctat 33121044  T
Q  525 tgggatgtgtggccttttcatcaagggatggggtatacat 564  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  33121043 tgggatgtgt-gccttttcatcaagggatggggtatacat 33121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 117 - 262
Target Start/End: Original strand, 32134018 - 32134164
Alignment:
Q  117 agaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatc 215  Q
    ||||||||||||||||  ||| ||| |||| |||| |||| ||||||||||| ||||| |||||||||||||||||||||  |||||| |||||||||||    
T  32134018 agaatgctaactagtgccctaagggcattggttaagcatctaaaataagtaagttttcttgaaaaagttgtgtaatcattacttgataaaaaataacatc 32134117  T
Q  216 ttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    |||||||   || ||||||||| |||||| ||||||| |||| ||||    
T  32134118 ttatattctcaaaacaaaatttctatttgtagattccttaactattg 32134164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 5611247 - 5611112
Alignment:
Q  139 ggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttt 238  Q
    ||||||| |||||||||||||| |||||| |||| ||||| ||||||| |||| ||| ||||||  ||| |||||||||||||||||||||||||||||     
T  5611247 ggtattggttaaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttc 5611148  T
Q  239 tatttgaagattccctaaccattgctttaaaggcac 274  Q
    |||||  ||||||| |||| ||| | ||||| ||||    
T  5611147 tatttatagattccttaacaatttcgttaaaagcac 5611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 262
Target Start/End: Original strand, 2470347 - 2470469
Alignment:
Q  140 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttt 239  Q
    |||||| |||| |||| |||||| |||| |||| ||||||||||||| ||||||||  ||||   ||||||| |||||||||||| |||||||| ||| |    
T  2470347 gtattggttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttct 2470446  T
Q  240 atttgaagattccctaaccattg 262  Q
    |||||  |||||| |||||||||    
T  2470447 atttggtgattccttaaccattg 2470469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 27082309 - 27082369
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgat 202  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  27082309 attggttaaacaaccaaaacaagtaaattttcatgaaaaagttgtgtaatgattatttgat 27082369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 8636857 - 8636806
Alignment:
Q  144 tgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcatt 195  Q
    ||||||| ||| |||||||||||| |||||||||||||||| ||||||||||    
T  8636857 tgattaagcatacaaaataagtaagttttcatgaaaaagttatgtaatcatt 8636806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 19659724 - 19659610
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||||||| ||||||||||| |||| || |||||||||||||||||||  |||||  || |||| |||| |||||| | | ||||||||| | |||| |    
T  19659724 ttaaacatctaaaataagtaagtttttataaaaaagttgtgtaatcattagttgatcaaatataatatctcatattt-tcaaacaaaatttatttttgta 19659626  T
Q  247 gattccctaaccattg 262  Q
    |||||| | |||||||    
T  19659625 gattccttgaccattg 19659610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 31223188 - 31223247
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatg-aaaaagttgtgtaatcatt 195  Q
    |||| |||| |||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  31223188 agggcattggttaaacatccaaaacaagtaagttttcatgaaaaaagttgtgtaatcatt 31223247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 227336 - 227471
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaag-ttgtgtaatcattgtttg-atagaaaataacatcttatatttctaagacaaaatttttatttg 244  Q
    |||| ||||||||| ||||||  ||| ||||||||  |||||||||||||||||  ||  ||| |||||||||||||||  || | ||||||| |||||     
T  227336 ttaagcatccaaaagaagtaagattttatgaaaaaaattgtgtaatcattgtttttatcaaaagtaacatcttatattttcaaaaaaaaatttctattta 227435  T
Q  245 aagattccctaaccattgctttaaaggcactggtta 280  Q
     ||||||| ||||||||||  ||| | |||||||||    
T  227436 tagattccttaaccattgccctaaggacactggtta 227471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 17345958 - 17345855
Alignment:
Q  141 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 240  Q
    ||||| |||| ||| ||||| || ||||||||  |||||||||| |||||||  |  |||||  ||| |||||| |||||||| ||| ||||||||||||    
T  17345958 tattggttaagcattcaaaacaaataaattttagtgaaaaagttatgtaatcgctacttgatcaaaagtaacattttatatttttaaaacaaaattttta 17345859  T
Q  241 tttg 244  Q
    ||||    
T  17345858 tttg 17345855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 31223253 - 31223291
Alignment:
Q  213 atcttatatttctaagacaaaatttttatttgaagattc 251  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  31223253 atcttatatttccaagacaaaatttttatttgtagattc 31223291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 113 - 262
Target Start/End: Original strand, 42251575 - 42251725
Alignment:
Q  113 taggagaatgctaactagtgt-tctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 211  Q
    ||||| ||||||||||||||| || |||| |||| |||| ||||||||| |||||| ||| ||||||||||||||||||||||||  ||||| |||||||    
T  42251575 taggaaaatgctaactagtgtctcaagggcattggttaagcatccaaaacaagtaagtttacatgaaaaagttgtgtaatcattgaatgataaaaaataa 42251674  T
Q  212 catcttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    ||| |||||||||||||| ||| |||||| ||  ||||||| |||||||||    
T  42251675 catgttatatttctaagataaattttttacttagagattccttaaccattg 42251725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 40346717 - 40346825
Alignment:
Q  153 atccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 252  Q
    ||||||||||||||| |||| |||||||||||||| ||||||| ||||||  |||||||||||||||||||  || ||||||||| ||| || |||||||    
T  40346717 atccaaaataagtaagtttttatgaaaaagttgtgcaatcattatttgatcaaaaataacatcttatattttcaatacaaaatttctatatgtagattcc 40346816  T
Q  253 ctaaccatt 261  Q
     ||||||||    
T  40346817 ttaaccatt 40346825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 41436328 - 41436418
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 237  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||||| ||| ||  |||||||||||||||| |||||||| |||||||    
T  41436328 ttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtaatcattattttatcaaaaataacatcttatacttctaagataaaattt 41436418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 18717853 - 18717965
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||| ||||||||| ||  ||||||||||||||||||||||||||||||  |||||  ||| ||||||||||||||| ||| | ||||||| |||||| |    
T  18717853 ttaagcatccaaaacaaacaaattttcatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaaaataaaatttctatttgta 18717952  T
Q  247 gattccctaacca 259  Q
     ||||| ||||||    
T  18717953 aattccttaacca 18717965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 31904342 - 31904236
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    |||| |||| |||| |||| |||||||||||||||| |||||||| |||||||||||||  |||||  |||||||||| |||||||| ||||| |||||     
T  31904342 agggcattggttaatcatctaaaataagtaaatttt-atgaaaaaattgtgtaatcattacttgattaaaaataacattttatatttttaagataaaata 31904244  T
Q  237 tttatttg 244  Q
    ||||||||    
T  31904243 tttatttg 31904236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 23453377 - 23453463
Alignment:
Q  176 gaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    ||||||||||||||||| || ||||||  ||| |||||||||||||||  ||||||||||||||||||| ||||||| |||| ||||    
T  23453377 gaaaaagttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaatttttatttgtagattccttaactattg 23453463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 42552106 - 42551958
Alignment:
Q  113 taggagaatgctaactagtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 212  Q
    ||||||||||||||| ||||  | | |  |||| |||||||| ||||| |||||| |||| ||||||||| |||| |||| || ||||||| |||||||     
T  42552106 taggagaatgctaaccagtgcccaatgacattggttaaacatacaaaacaagtaagtttttatgaaaaagatgtgcaatcgttatttgataaaaaataat 42552007  T
Q  213 atcttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    || |||||| |  ||||||||| ||||||||| ||||||| |||||||||    
T  42552006 at-ttatatcttcaagacaaaaattttatttgtagattccttaaccattg 42551958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 13717171 - 13717322
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    |||||| || |||| |||| ||||||||||| ||||||| |||||||| |||||| |||  ||  || |||||||||| ||||||||  |||||||||||    
T  13717171 agggtaatggttaagcatctaaaataagtaagttttcatcaaaaagttatgtaattattacttatta-aaaataacattttatattttcaagacaaaatt 13717269  T
Q  237 tttatttgaagattccctaaccattgctttaaaggcactggttaacaaaactc 289  Q
    | |||||| | ||||| |||| |||||| | | ||||| ||||||||| ||||    
T  13717270 tctatttgtatattccttaactattgctctgagggcaccggttaacaagactc 13717322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 259
Target Start/End: Complemental strand, 40574253 - 40574141
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||| |||  |  ||  ||| | |||| ||||||||| |||||||||||| |||||| |    
T  40574253 ttaagcatccaaaacaagtacattttcatgaaaaagttgtgtaattattactctatcaaaagttacattttatatttccaagacaaaatttctatttgta 40574154  T
Q  247 gattccctaacca 259  Q
    |||||| ||||||    
T  40574153 gattccttaacca 40574141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 13738540 - 13738393
Alignment:
Q  113 taggagaatgctaactagtgttctaggg-tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 211  Q
    ||||||||||  ||||||||| ||| || ||||| |||| ||||||||| |||||| |||| || ||||| |||||||||||||  || ||   || |||    
T  13738540 taggagaatggcaactagtgtcctaaggatattggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaa 13738441  T
Q  212 catcttatatttctaagacaaaatttttatttgaagattccctaacca 259  Q
    ||||||||||||  || |||||||||||||||  ||||||| ||||||    
T  13738440 catcttatattttcaaaacaaaatttttatttatagattccttaacca 13738393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 14953021 - 14953123
Alignment:
Q  141 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 240  Q
    ||||| |||| ||||||||||||||||||||  |  ||||| |||| ||||||||  | |||  |||||||||| |||||||| ||||||||||||||||    
T  14953021 tattggttaagcatccaaaataagtaaatttgtaaaaaaaaattgtctaatcattactcgatcaaaaataacattttatatttttaagacaaaattttta 14953120  T
Q  241 ttt 243  Q
    |||    
T  14953121 ttt 14953123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 17641166 - 17641291
Alignment:
Q  136 tagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaat 235  Q
    ||||||| ||||||| |||| ||||||||||| |||||||  |||||||||| ||| |||  || ||  ||| |||||| ||||||||| || ||||| |    
T  17641166 tagggtactgattaagcatctaaaataagtaagttttcattgaaaagttgtgcaataatttctttatcaaaagtaacattttatatttcaaaaacaaagt 17641265  T
Q  236 ttttatttgaagattccctaaccatt 261  Q
    ||||||||  ||||||| ||||||||    
T  17641266 ttttatttatagattccttaaccatt 17641291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 4978867 - 4978775
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaa 234  Q
    |||| ||||||||||||||||| ||| |||| || |||| ||||||||||||||  |||||  ||| |||||||||||||||  |||||||||    
T  4978867 attggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaa 4978775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 4996775 - 4996683
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaa 234  Q
    |||| ||||||||||||||||| ||| |||| || |||| ||||||||||||||  |||||  ||| |||||||||||||||  |||||||||    
T  4996775 attggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaa 4996683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 28331364 - 28331277
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaa 234  Q
    |||| ||| |||||||||||| |||| |||||| |||||||||||||||  |||||  ||||||| || ||||||||| |||||||||    
T  28331364 ttaagcattcaaaataagtaagtttttatgaaagagttgtgtaatcattacttgatcaaaaataatattttatatttccaagacaaaa 28331277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 36087408 - 36087462
Alignment:
Q  209 taacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgc 263  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||    
T  36087408 taacatcttatatttctaagataaaatttctatttgtagattccttaaccattgc 36087462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 6315885 - 6315966
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 223  Q
    |||| |||||||||||||| || ||||||||  | ||||| |||||||||||||  |||||  |||||||||||||||||||    
T  6315885 attggttaaacatccaaaacaaataaatttttgtaaaaaaattgtgtaatcattacttgatcaaaaataacatcttatattt 6315966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 7932991 - 7932897
Alignment:
Q  157 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattc 251  Q
    ||||||||||| |||| | |||||||||||| |||||||  || ||  ||| ||| |||||| |||||||| ||||||||| |||||| ||||||    
T  7932991 aaaataagtaagtttttacgaaaaagttgtgcaatcattactttatccaaagtaaaatcttacatttctaaaacaaaatttctatttgtagattc 7932897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 18857431 - 18857533
Alignment:
Q  141 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 240  Q
    |||||||||| ||| ||||| |||||||||||||||||||  | ||||||| |||  || ||  || ||||||| | |||||| ||||||||| ||||||    
T  18857431 tattgattaagcattcaaaacaagtaaattttcatgaaaatatcgtgtaattattactttatcaaagataacatatcatatttttaagacaaacttttta 18857530  T
Q  241 ttt 243  Q
    |||    
T  18857531 ttt 18857533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 43681359 - 43681305
Alignment:
Q  169 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 223  Q
    |||| ||||||||||||| |||||||| |||| || |||||||||||||||||||    
T  43681359 tttttatgaaaaagttgtataatcattatttggtaaaaaataacatcttatattt 43681305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 4557574 - 4557691
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaa-gttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttga 245  Q
    |||| ||||||| |||||||| |||| |||||||| |||| ||||| |||  |  ||  |||||||| ||||||||||| |||| ||||||| ||||||     
T  4557574 ttaagcatccaagataagtaagtttttatgaaaaaagttgagtaataattactcaatcaaaaataacttcttatatttccaagataaaatttctatttgt 4557673  T
Q  246 agattccctaaccattgc 263  Q
    ||||||  ||||||||||    
T  4557674 agattctttaaccattgc 4557691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 261
Target Start/End: Complemental strand, 1004862 - 1004771
Alignment:
Q  169 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccatt 261  Q
    |||| |||||||||||||||||||||  ||| ||  ||| ||| || ||||||||  |||||||||||| |||||| ||||||| ||||||||    
T  1004862 tttttatgaaaaagttgtgtaatcataattt-atcaaaagtaatattttatattttcaagacaaaatttctatttgtagattccttaaccatt 1004771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 9021482 - 9021566
Alignment:
Q  153 atccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 237  Q
    |||||||||||| || ||||||  ||||| | ||||||||||| |||  |  |||||||||||||| ||||| ||||||||||||    
T  9021482 atccaaaataagaaagttttcacaaaaaaatagtgtaatcattatttagtcaaaaataacatcttacatttccaagacaaaattt 9021566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 29526411 - 29526315
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 243  Q
    ||||||||  ||||||||||  ||||||| ||||| |||||||||||||  || ||  ||||||| || |||||||| |||||  ||||||||||||    
T  29526411 ttaaacatttaaaataagtaggttttcataaaaaaattgtgtaatcattactttattaaaaataatattttatatttttaagattaaatttttattt 29526315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 8580477 - 8580600
Alignment:
Q  110 tagtaggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaa 208  Q
    |||| ||||||||||||| ||||  ||| ||| |||| |||| |||||||| ||||| | |||||||||||||  ||| |||| |||  || ||  |||     
T  8580477 tagttggagaatgctaaccagtgccctaagggcattggttaagcatccaaagtaagttagttttcatgaaaaatgtgtctaattattacttaatcaaaag 8580576  T
Q  209 taacatcttatatttctaagacaa 232  Q
    |||||||||||||||| |||||||    
T  8580577 taacatcttatatttccaagacaa 8580600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 242
Target Start/End: Original strand, 27896466 - 27896561
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatt 242  Q
    ||||||| ||||||||||||| |||| || ||||||||||||||| |||  |  ||  ||| ||||| ||||||||||||| ||||| ||| ||||    
T  27896466 ttaaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctatt 27896561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 7669194 - 7669228
Alignment:
Q  209 taacatcttatatttctaagacaaaatttttattt 243  Q
    ||||||||||||||| |||||||||||||||||||    
T  7669194 taacatcttatatttttaagacaaaatttttattt 7669228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 3689667 - 3689614
Alignment:
Q  209 taacatcttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    |||||||||||||||| |||| ||||||| |||||| ||| ||| |||||||||    
T  3689667 taacatcttatatttcaaagataaaatttctatttgtagaatccttaaccattg 3689614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 38024290 - 38024194
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttg 244  Q
    |||||||||||||| |||    |||| ||||||||||| |||||| ||| ||||||  ||| ||| ||||||||||| ||||| ||||||| ||||||    
T  38024290 ttaaacatccaaaacaagcccgttttaatgaaaaagttatgtaattattatttgatc-aaagtaatatcttatatttttaagataaaatttctatttg 38024194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 43131874 - 43131774
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||||||||||| |||||| |||||| |||| || |||| || ||||||| |||  |||||  ||| ||  | |||| |||| |||||||||||||||||    
T  43131874 attgattaaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaaatttttat 43131775  T
Q  242 t 242  Q
    |    
T  43131774 t 43131774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 27544592 - 27544697
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||  |||| ||||||| |||||| |    
T  27544592 ttaaacatccaaaacaagtaaattttcatgaaaaagttgtgtaatcattacatgataaaaaataacatcttatattttcaagataaaatttctatttgta 27544691  T
Q  247 gattcc 252  Q
    ||||||    
T  27544692 gattcc 27544697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 113 - 264
Target Start/End: Original strand, 22293952 - 22294104
Alignment:
Q  113 taggagaatgctaactagtgtt-ctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 211  Q
    ||||||||||||||| ||||   | ||||||||| |||||||| ||||| |||||| |||| |||||||||||||| ||| ||| ||||||  |||  ||    
T  22293952 taggagaatgctaaccagtgccacaagggtattggttaaacattcaaaacaagtaagtttttatgaaaaagttgtgcaataattatttgatcaaaaccaa 22294051  T
Q  212 catcttatatttctaagacaaaatttttatttgaagattccctaaccattgct 264  Q
     |||||||||||| |||||||||||| |||||| ||||||| |||||||||||    
T  22294052 tatcttatatttccaagacaaaatttctatttgtagattccttaaccattgct 22294104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 41645032 - 41645152
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| |||| |||| |||||||||||||||||||||||  ||||||||||||||  |||||| ||||||| |||||||||||   |||||||||||||||    
T  41645032 attgcttaagcatctaaaataagtaaattttcatgaaa--gttgtgtaatcattacttgataaaaaataatatcttatattttctagacaaaatttttat 41645129  T
Q  242 ttgaagattccctaaccattgct 264  Q
    ||  ||||||  |||||| ||||    
T  41645130 ttatagattctttaaccaatgct 41645152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 30293911 - 30293800
Alignment:
Q  169 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgctttaa 268  Q
    ||||||||||||| || ||||||||||  |||||  ||| ||||||||||||||| ||||||||||||| |||||| ||||||  |||||| | || |||    
T  30293911 ttttcatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctatttgtagattctttaaccaatactctaa 30293812  T
Q  269 aggcactggtta 280  Q
     |||||||||||    
T  30293811 gggcactggtta 30293800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 36482050 - 36482168
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| ||||||||| ||||||| ||| ||||||| |||||||||||||| |||| ||||||  ||| |||||||||||||||  || ||||||||| |||    
T  36482050 attggttaaacatctaaaataa-taagttttcataaaaaagttgtgtaaacattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctat 36482148  T
Q  242 ttgaagattccctaaccatt 261  Q
    ||| ||||||  ||||||||    
T  36482149 ttgtagattcattaaccatt 36482168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 262
Target Start/End: Original strand, 11815880 - 11816029
Alignment:
Q  114 aggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 212  Q
    ||||||||||||||||||||  || ||| | |||||||| ||  |||| |||||| |||| ||||||||  ||||||||||||  || ||  ||| ||||    
T  11815880 aggagaatgctaactagtgtcttaagggcaatgattaaatatttaaaacaagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaac 11815979  T
Q  213 atcttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    |||||||||||  |||||||||||| |||||  ||||||  |||||||||    
T  11815980 atcttatattttcaagacaaaatttctatttttagattcattaaccattg 11816029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 259
Target Start/End: Complemental strand, 30840712 - 30840596
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    ||||||||| ||||||||| |||||| ||||||  |||||||||||||||||||  |||||  ||| |||||||||||||||  |||||||| ||| | |    
T  30840712 attgattaagcatccaaaacaagtaagttttcaa-aaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaattttctgt 30840614  T
Q  242 ttgaagattccctaacca 259  Q
    | | ||||||| ||||||    
T  30840613 tagtagattccttaacca 30840596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 41175443 - 41175393
Alignment:
Q  141 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaat 191  Q
    ||||| ||||||||||||| ||||||| ||||||||||||| |||||||||    
T  41175443 tattggttaaacatccaaattaagtaagttttcatgaaaaaattgtgtaat 41175393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 6646291 - 6646428
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||||||| |||| |||||||| || |||||||| |||||||||||||   | ||  ||| |||||| ||||||||| || | |||| ||||||||| |    
T  6646291 ttaaacatctaaaacaagtaaatattaatgaaaaaattgtgtaatcattacattatcaaaagtaacatattatatttcaaatataaaaattttatttgta 6646390  T
Q  247 gattccctaaccattgctttaaaggcactggttaacaa 284  Q
     |||   ||| ||||||| ||| ||||| |||||||||    
T  6646391 tattatttaatcattgctctaagggcaccggttaacaa 6646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 8151918 - 8151815
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaa-ttttcatgaaaaagttgtgtaatcattgt--ttgatagaaaataacatcttatatttctaagacaaa 233  Q
    ||||||||||||||| || ||||||||||||| ||||||| |||||||| | |||| ||| |  |||||  ||| |||||||||||||||  || |||||    
T  8151918 agggtattgattaaatatacaaaataagtaaatttttcataaaaaagttatataattattatacttgattaaaagtaacatcttatattttcaaaacaaa 8151819  T
Q  234 attt 237  Q
    ||||    
T  8151818 attt 8151815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 7718502 - 7718589
Alignment:
Q  157 aaaataagtaaattttcatgaaaaag-ttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 243  Q
    ||||||| ||| |||| ||||||||  ||||||||| ||| ||| ||  ||||||||||||||||||| ||||| ||||||| |||||    
T  7718502 aaaataaataagtttttatgaaaaaaattgtgtaatgattatttcattaaaaataacatcttatatttttaagataaaatttatattt 7718589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 34346951 - 34347002
Alignment:
Q  213 atcttatatttctaagacaaaatttttatttgaagattccctaaccattgct 264  Q
    |||||||||||  |||||||| |||||||||| ||||||| |||||||||||    
T  34346951 atcttatattttcaagacaaattttttatttgtagattccttaaccattgct 34347002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 26402107 - 26402066
Alignment:
Q  157 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtt 198  Q
    ||||||||||| ||||||  ||||||||||||||||||||||    
T  26402107 aaaataagtaatttttcaataaaaagttgtgtaatcattgtt 26402066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 27366059 - 27365991
Alignment:
Q  169 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 237  Q
    ||||||||||||| ||| ||||||||| |||| |  ||| ||| |||||||||||| |||| |||||||    
T  27366059 ttttcatgaaaaaattgcgtaatcattatttggtctaaagtaatatcttatatttccaagataaaattt 27365991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 1342325 - 1342439
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||| |||| ||||||||||| ||||||| ||||||||||||||||||||||| ||  ||| |||||||||||||||| |||| ||||||| ||||||||    
T  1342325 ttaagcatctaaaataagtaagttttcataaaaaagttgtgtaatcattgttt-atcaaaagtaacatcttatatttccaagataaaatttctatttgaa 1342423  T
Q  247 gattccctaaccattg 262  Q
    ||||| ||||||||||    
T  1342424 gattctctaaccattg 1342439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 10029160 - 10029282
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| |||| ||||||||  ||||||||||| ||||||||||||| ||||||||  |||||  ||| |||||||||||||||| |||| |||||||||||    
T  10029160 attggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagtaacatcttatatttccaagataaaatttttat 10029259  T
Q  242 ttgaagattccctaaccattgct 264  Q
    ||| ||||| | |||||||||||    
T  10029260 ttgtagatttcttaaccattgct 10029282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 29030422 - 29030554
Alignment:
Q  115 ggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaa---aata 210  Q
    ||||||||||||||| |||| || |||||||||||||||||  |||||||||||||||| || ||||| ||||| ||||||| ||||||| ||   ||||    
T  29030422 ggagaatgctaactaatgttataagggtattgattaaacatttaaaataagtaaatttttataaaaaaattgtgcaatcattatttgataaaaaataata 29030521  T
Q  211 acatcttatatttctaagacaaaatttttattt 243  Q
    |||| ||||||||| |||||||||||| |||||    
T  29030522 acatgttatatttcaaagacaaaatttatattt 29030554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 32881109 - 32881219
Alignment:
Q  140 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttt 239  Q
    |||||| ||||||||||||||||||||| |||| |  |||| |||||||||||||   |||||| ||||||| ||||||||||| |||||||||||||||    
T  32881109 gtattggttaaacatccaaaataagtaagtttttaataaaatgttgtgtaatcataacttgataaaaaataatatcttatatttttaagacaaaattttt 32881208  T
Q  240 atttgaagatt 250  Q
    ||||| |||||    
T  32881209 atttgtagatt 32881219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 113 - 261
Target Start/End: Original strand, 41726864 - 41727013
Alignment:
Q  113 taggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 211  Q
    |||||||||| |||||||||  ||| ||| | || |||| |||| ||||||||||| |||| ||||||||  | ||||||||||  || ||| |||||||    
T  41726864 taggagaatgataactagtgccctaagggcaatggttaagcatctaaaataagtaagtttttatgaaaaaactatgtaatcattactttataaaaaataa 41726963  T
Q  212 catcttatatttctaagacaaaatttttatttgaagattccctaaccatt 261  Q
    ||| ||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  41726964 cattttatatttccaagacaaaatttttatttgtagattccttaaccatt 41727013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 44649051 - 44648932
Alignment:
Q  144 tgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 243  Q
    ||||||| ||||||||| || ||| |||||||||||||||||||||||||||  || ||  ||| |||||| ||||||||  |||||||||||| |||||    
T  44649051 tgattaagcatccaaaacaaataagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctattt 44648952  T
Q  244 gaagattccctaaccattgc 263  Q
    | ||||||| ||||||||||    
T  44648951 gtagattccttaaccattgc 44648932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 11150916 - 11151041
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    |||| |||| |||| ||| |||||||||||| |||| |  ||||| ||||||||||||| ||||||  ||| |||||||||||||||||||||||||| |    
T  11150916 agggcattggttaagcattcaaaataagtaagtttttaaaaaaaa-ttgtgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaat 11151014  T
Q  237 tttatttgaagattccctaaccattgc 263  Q
    |||||||| ||||||| ||| ||||||    
T  11151015 tttatttgtagattccttaatcattgc 11151041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 137 - 261
Target Start/End: Complemental strand, 35901536 - 35901412
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    ||||||||| |||| ||||||||| |||||| |||| |||||||||||||| ||||||| ||| ||  ||| |||||||||| ||||  || ||||||||    
T  35901536 agggtattggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatt 35901437  T
Q  237 tttatttgaagattccctaaccatt 261  Q
    | |||||| ||||||| ||||||||    
T  35901436 tctatttgtagattccttaaccatt 35901412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 18200791 - 18200677
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||| ||||||||||||||||  ||| |||||||| |||||||||||||  || ||  ||| |||||| |||||||| |||||||||||||||||||| |    
T  18200791 ttaagcatccaaaataagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatttgta 18200692  T
Q  247 gattccctaaccatt 261  Q
    |||| | ||||||||    
T  18200691 gatttcttaaccatt 18200677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 18647606 - 18647474
Alignment:
Q  112 gtaggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaata 210  Q
    ||||||||||||||||||||||  || ||||| || |||| |||  |||| |||||||||| ||||||||| ||||||||||||  ||| ||  ||||||    
T  18647606 gtaggagaatgctaactagtgtcgtaagggtaatggttaagcatttaaaacaagtaaatttccatgaaaaaattgtgtaatcatcattttatc-aaaata 18647508  T
Q  211 acatcttatatttctaagacaaaatttttatttg 244  Q
    ||||||||||||| ||||| ||||||| ||||||    
T  18647507 acatcttatatttttaagataaaatttctatttg 18647474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 31330968 - 31331123
Alignment:
Q  113 taggagaatgctaactagtgttctagggt-attgattaaacatccaaaataagtaaattttcatgaa-aaagttgtgtaatcattgtttgatagaaaata 210  Q
    |||||||||| |||| ||||||||| ||  |||| |||| ||||||||| ||| |||| ||| | || ||||||||||||||| ||||||||  ||| ||    
T  31330968 taggagaatgttaaccagtgttctaaggacattggttaagcatccaaaacaagcaaatgttcttaaagaaagttgtgtaatcactgtttgatcaaaagta 31331067  T
Q  211 acatcttatatttctaagacaaaatttttatttgaagattccctaaccattgcttt 266  Q
    |||||||||||||| |||| ||||||| |||||| ||| ||| ||| || ||||||    
T  31331068 acatcttatatttcgaagataaaatttctatttgtagaatccttaagcaatgcttt 31331123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 6270249 - 6270144
Alignment:
Q  157 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 256  Q
    |||| |||||| ||||||| |||||||||||||||||||  || ||  ||||||||| |||||||||| ||||||||||||||| ||| ||||||| |||    
T  6270249 aaaacaagtaagttttcataaaaaagttgtgtaatcattactttatc-aaaataacaccttatatttccaagacaaaatttttaattgtagattccttaa 6270151  T
Q  257 ccattgc 263  Q
    | |||||    
T  6270150 ctattgc 6270144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 13873694 - 13873816
Alignment:
Q  141 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 240  Q
    ||||| |||||||| ||||| || ||| |||| |||||||| || || |||||||  || ||  |||||||||||||||||||||||||||||| |||||    
T  13873694 tattggttaaacattcaaaacaattaagtttttatgaaaaaattatgcaatcattacttaattaaaaataacatcttatatttctaagacaaaaatttta 13873793  T
Q  241 tttgaagattccctaaccattgc 263  Q
    |||  ||||||| ||| ||||||    
T  13873794 tttatagattccttaatcattgc 13873816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 42361618 - 42361529
Alignment:
Q  153 atccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatt 242  Q
    |||||||| |||||| ||||||||||||||||||| |||| ||  || ||| |||| ||||||||||||||| |||||||||||| ||||    
T  42361618 atccaaaacaagtaagttttcatgaaaaagttgtgcaatctttactttataaaaaagaacatcttatatttcaaagacaaaatttctatt 42361529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 600375 - 600491
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||||||| |||| || ||| ||||||||||||||||||| |||||||  || ||  ||| |||||||||||||||| ||| |||||  |||||||| |    
T  600375 ttaaacatctaaaacaaataagttttcatgaaaaagttgtgcaatcattactttatcaaaagtaacatcttatatttccaagccaaaaaatttatttgta 600474  T
Q  247 gattccctaaccattgc 263  Q
    |||||| ||| ||||||    
T  600475 gattccttaatcattgc 600491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 23425382 - 23425277
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac----atcttatatttctaagacaaaattt 237  Q
    |||||||||  |||||||| |||||  |||| |||||||||||||||||||||| ||||||  ||||||||    ||||||||||| | |||||||||||    
T  23425382 attgattaagtatccaaaacaagtacgttttaatgaaaaagttgtgtaatcattatttgatcaaaaataacatttatcttatatttttgagacaaaattt 23425283  T
Q  238 ttattt 243  Q
    ||||||    
T  23425282 ttattt 23425277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 27507051 - 27506943
Alignment:
Q  152 catccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattc 251  Q
    |||| |||| |||||||||||||||||||||||||||||| ||| ||| ||  ||| ||| |||||||||||| || ||  |||||||||||| ||||||    
T  27507051 catctaaaacaagtaaattttcatgaaaaagttgtgtaattattattttatcaaaagtaatatcttatatttccaaaac--aatttttatttgtagattc 27506954  T
Q  252 cctaaccattg 262  Q
      |||||||||    
T  27506953 tttaaccattg 27506943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 43917555 - 43917694
Alignment:
Q  113 taggagaatgctaactagtgttctaggg-tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 211  Q
    ||||||||||||||| ||||   || || ||||| |||| ||||||||| ||||||||||| || ||||| ||||||||| ||| ||||||  ||| |||    
T  43917555 taggagaatgctaaccagtgcattaaggatattggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagtaa 43917654  T
Q  212 catcttatatttctaagacaaaatttttatttgaagattc 251  Q
    |  |||||||||  ||||||||| ||||||||| ||||||    
T  43917655 cgccttatattttcaagacaaaaattttatttgtagattc 43917694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 3347610 - 3347506
Alignment:
Q  157 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 256  Q
    |||||| ||||||||| ||||||| |||||||||| |||  || ||  ||| |||||||||||||||  ||||||||||||||||||| ||||| | |||    
T  3347610 aaaatatgtaaatttttatgaaaa-gttgtgtaattattactttattaaaagtaacatcttatattttcaagacaaaatttttatttgtagatttcttaa 3347512  T
Q  257 ccattg 262  Q
    ||||||    
T  3347511 ccattg 3347506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 20542380 - 20542502
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    |||| |||| |||| |||||||||  ||||| |||| | ||||||  ||||||||||||  || ||  ||| |||||||||||||||| ||||| |||||    
T  20542380 agggcattggttaagcatccaaaacgagtaagtttttaagaaaaaagtgtgtaatcattacttaatcaaaagtaacatcttatatttccaagacgaaatt 20542479  T
Q  237 tttatttgaagattccctaacca 259  Q
    | |||||| ||||||| ||||||    
T  20542480 tctatttgtagattccttaacca 20542502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 17720283 - 17720212
Alignment:
Q  152 catccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 223  Q
    ||||||||| ||  || |||||||||||||||||||||||||||   ||||  |||||||||||||||||||    
T  17720283 catccaaaacaaacaagttttcatgaaaaagttgtgtaatcattacatgatcaaaaataacatcttatattt 17720212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 2768641 - 2768559
Alignment:
Q  177 aaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaacca 259  Q
    ||||| ||||| ||||||| ||| ||  ||| |||||| ||||||||| ||||||||||||||||||| ||| ||| ||||||    
T  2768641 aaaaaattgtgcaatcattatttaattaaaactaacattttatatttccaagacaaaatttttatttgtagaatccttaacca 2768559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 23725745 - 23725687
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcatt 195  Q
    |||| |||| |||| ||||||||| |||||| |||||||||||||||||||| ||||||    
T  23725745 agggcattggttaagcatccaaaacaagtaagttttcatgaaaaagttgtgtgatcatt 23725687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 40489853 - 40489985
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||| ||| |||| || ||| |||| ||||||||||| ||||||||||  || ||  | | |||||| ||||||||  ||| ||||||||||| ||| |    
T  40489853 ttaaatatctaaaacaaataagtttttatgaaaaagttatgtaatcattactttatcaatagtaacattttatatttacaaggcaaaattttta-ttgta 40489951  T
Q  247 gattccctaaccattgctttaaaggcactggtta 280  Q
    |||||| ||||||||||  |||| ||||||||||    
T  40489952 gattccttaaccattgccctaaaagcactggtta 40489985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 3137408 - 3137499
Alignment:
Q  152 catccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 243  Q
    ||||||||| || ||| |||  |||||||||||||||||| |||  |||||  ||| |||||||||| ||||  |||||||||||| |||||    
T  3137408 catccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctattt 3137499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 547060 - 547166
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac----atcttatatttctaagacaaaattt 237  Q
    |||||||||  ||| |||| |||||  |||| |||||||||||||||||| ||| ||||||  ||||||||    |||||||||||  |||| |||||||    
T  547060 attgattaagtatctaaaacaagtacgttttaatgaaaaagttgtgtaattattatttgatcaaaaataacatttatcttatattttcaagataaaattt 547159  T
Q  238 ttatttg 244  Q
     ||||||    
T  547160 ctatttg 547166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 33621438 - 33621474
Alignment:
Q  216 ttatatttctaagacaaaatttttatttgaagattcc 252  Q
    |||||||| |||||||||||||||||||| |||||||    
T  33621438 ttatatttttaagacaaaatttttatttgtagattcc 33621474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 27284065 - 27284191
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    |||| |||| ||||||||||||||||| ||| |||| || ||||||||||| ||||||| ||||||  ||| |||||||||||||||| |||||||||||    
T  27284065 agggcattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagacaaaatt 27284164  T
Q  237 tttatttgaagattccctaaccattgc 263  Q
    | ||| || ||||||| ||||||||||    
T  27284165 tctatatgtagattccttaaccattgc 27284191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 148 - 289
Target Start/End: Original strand, 22019607 - 22019748
Alignment:
Q  148 taaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaag 247  Q
    ||||||| ||||| |||||| |||||| ||||||||||||||||||||  || |||||||||||||||||||||||  ||||||||||||| ||||  ||    
T  22019607 taaacattcaaaacaagtaagttttcaagaaaaagttgtgtaatcattacttaatagaaaataacatcttatattttaaagacaaaattttcatttatag 22019706  T
Q  248 attccctaaccattgctttaaaggcactggttaacaaaactc 289  Q
    ||||| |||||| |    ||||  ||||||||||||||||||    
T  22019707 attccttaaccaatatcctaaaaacactggttaacaaaactc 22019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 141 - 261
Target Start/End: Complemental strand, 12076544 - 12076424
Alignment:
Q  141 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 240  Q
    ||||| ||||||||| |||| |||||| || |||| ||||| |||||| ||||||| |||||  ||| |||||||||||||||  |||||||||||||||    
T  12076544 tattggttaaacatctaaaacaagtaagttctcatcaaaaaattgtgtgatcattgcttgatcaaaattaacatcttatattttcaagacaaaattttta 12076445  T
Q  241 tttgaagattccctaaccatt 261  Q
    |||||||||||| ||||||||    
T  12076444 tttgaagattccttaaccatt 12076424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 20775070 - 20775189
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| |||| ||||||||| |||||| |||| ||||||||||| |||||| ||| ||||||  ||||||| ||||||||||||||||||||| |||||||    
T  20775070 attggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaattttttat 20775169  T
Q  242 ttgaagattccctaaccatt 261  Q
    ||  ||||||  ||||||||    
T  20775170 ttatagattcattaaccatt 20775189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 263
Target Start/End: Original strand, 13967814 - 13967964
Alignment:
Q  115 ggagaatgctaactagtgttct-agggtattgattaaacatccaaaataagtaaattttc-atgaaaaagttgtgtaatcattgtttgatagaaaataac 212  Q
    ||||||||||||| ||||  || | |||| || |||||||||||||| | |||| ||||  ||||||||||||| ||||||||  |||||| ||||||||    
T  13967814 ggagaatgctaaccagtgccctcatggtaatggttaaacatccaaaacatgtaatttttttatgaaaaagttgtataatcattacttgataaaaaataac 13967913  T
Q  213 atcttatatttctaagacaaaatttttatttgaagattccctaaccattgc 263  Q
    |||||||||| | |||||||||||| |||||| ||||||| |||| |||||    
T  13967914 atcttatattaccaagacaaaatttctatttgtagattccttaactattgc 13967964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 142 - 262
Target Start/End: Complemental strand, 16341217 - 16341097
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| ||||||||||||||||| |||||||| |||||||| || ||||||||||  || ||  ||| |||||| ||||||||| ||||||||| ||||||    
T  16341217 attggttaaacatccaaaataaataaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttat 16341118  T
Q  242 ttgaagattccctaaccattg 262  Q
    ||| | ||||| |||||||||    
T  16341117 ttgtaaattccttaaccattg 16341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 12094961 - 12095077
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||  || ||  ||| ||| |||||||||||  ||  |||||||| |||||| |    
T  12094961 ttaaacatccaaaataagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaatatcttatattttcaatgcaaaatttctatttgta 12095060  T
Q  247 gattccctaaccattgc 263  Q
    |||||| |||| |||||    
T  12095061 gattccttaactattgc 12095077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 262
Target Start/End: Original strand, 27133545 - 27133667
Alignment:
Q  140 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttt 239  Q
    |||||| |||| |||| |||||| |||| |||| ||||||||||||| ||||||||  ||||   ||||||| |||||||||||| |||||||| ||| |    
T  27133545 gtattggttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttct 27133644  T
Q  240 atttgaagattccctaaccattg 262  Q
    |||||  |||||| |||||||||    
T  27133645 atttggtgattccttaaccattg 27133667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 31991568 - 31991452
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||||||  ||||||||||||||||||||||||| | ||||||| |||  || ||  |||||||||||||||||||  ||  ||||||||||| |||      
T  31991568 ttaaacatataaaataagtaaattttcatgaaaaaatcgtgtaattattactttatcaaaaataacatcttatattttcaaagcaaaatttttaattgtg 31991469  T
Q  247 gattccctaaccattgc 263  Q
    |||||| ||||||||||    
T  31991468 gattccttaaccattgc 31991452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 2824936 - 2824814
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    |||| ||||||||| |||| |||| ||| || |||| ||||||| ||||||||||||||  |||||  ||| |||||||||||||| | ||||||||| |    
T  2824936 agggcattgattaagcatctaaaacaagcaagtttttatgaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattcccaagacaaaagt 2824837  T
Q  237 tttatttgaagattccctaacca 259  Q
      |||||| ||| ||| ||||||    
T  2824836 gctatttgtagaatccttaacca 2824814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 19480508 - 19480616
Alignment:
Q  116 gagaatgctaactagtgt-tctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacat 214  Q
    |||||||||||||| ||  || ||||||||||||||  ||  |||| |||||| |||| ||||||||||||||||||||||  || ||  ||| ||||||    
T  19480508 gagaatgctaactaatgcctcaagggtattgattaagaatttaaaacaagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacat 19480607  T
Q  215 cttatattt 223  Q
    |||||||||    
T  19480608 cttatattt 19480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 28176801 - 28176892
Alignment:
Q  169 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccatt 261  Q
    |||| ||||||||| |||||||||||| ||| ||  ||||||| ||||||||||||||||| ||||||| |||||| | ||| | ||||||||    
T  28176801 ttttaatgaaaaagatgtgtaatcattattttatc-aaaataatatcttatatttctaagataaaatttctatttgtaaatttcttaaccatt 28176892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 7437947 - 7437842
Alignment:
Q  139 ggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttt 238  Q
    ||||||| |||| ||| ||||||||  || |||| | |||||||||||||||||||   ||| |  ||| |||||||||||||||| |||||| | ||||    
T  7437947 ggtattggttaagcattcaaaataaacaagtttttacgaaaaagttgtgtaatcatgacttgttcaaaagtaacatcttatatttccaagacacattttt 7437848  T
Q  239 tatttg 244  Q
    ||||||    
T  7437847 tatttg 7437842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 22611977 - 22611904
Alignment:
Q  177 aaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagatt 250  Q
    ||||| ||| |||||||||  || || |||| ||||||||||||||| ||||||||||||| |||||| |||||    
T  22611977 aaaaaattgagtaatcattactttatcgaaagtaacatcttatatttttaagacaaaatttatatttgtagatt 22611904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 31861513 - 31861444
Alignment:
Q  172 tcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||||||||| |||||||||||||  |||||  ||| |||||||||||||||| || | |||||||||||    
T  31861513 tcatgaaaaatttgtgtaatcattacttgatcaaaagtaacatcttatatttccaaaataaaatttttat 31861444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 21755875 - 21755974
Alignment:
Q  146 attaaacatccaaaataagtaaattttcat--gaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 243  Q
    ||||||||| ||||| ||||||||||||||   ||||| | ||||||||||| ||| ||| ||||||| || ||||||||   ||||||||||| |||||    
T  21755875 attaaacatgcaaaacaagtaaattttcattaaaaaaaatggtgtaatcattatttaataaaaaataatattttatattttcgagacaaaatttctattt 21755974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 31089878 - 31089779
Alignment:
Q  163 agtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    ||||| |||| ||||||||||||||||||||||  || ||  ||| |||||| |||||||||  ||||||||||| |||| | ||||||| ||| |||||    
T  31089878 agtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacat-ttatatttcctagacaaaatttctattggtagattccttaatcattg 31089780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 55126879 - 55126783
Alignment:
Q  157 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgat-agaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 252  Q
    ||||||| ||| |||| |||||||||||||||||||||| ||| || | ||| |||||| ||||||||  || ||||||  |||||||| |||||||    
T  55126879 aaaataaataagtttttatgaaaaagttgtgtaatcattattttatcaaaaagtaacattttatattttcaaaacaaaaaatttatttgtagattcc 55126783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 31089564 - 31089510
Alignment:
Q  209 taacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgc 263  Q
    ||||||||||||||| | |||||||||||||||||  ||||||| ||| ||||||    
T  31089564 taacatcttatattttttagacaaaatttttatttatagattccttaatcattgc 31089510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 39810822 - 39810737
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 223  Q
    ||||||||| |||||||||||||| || ||  ||||||||| ||| ||||||||| |||  |||||  ||| |||||||||||||||    
T  39810822 agggtattggttaaacatccaaaacaaatatgttttcatgataaa-ttgtgtaattattacttgatcaaaagtaacatcttatattt 39810737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 52837387 - 52837333
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaat 191  Q
    |||| |||| |||| ||||||||| ||| ||||||| ||||||||||||||||||    
T  52837387 agggcattggttaagcatccaaaacaagaaaatttttatgaaaaagttgtgtaat 52837333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 37183077 - 37183137
Alignment:
Q  183 ttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 243  Q
    |||||||||||||  |||||  |||||||||| |||||||| ||||| || ||||||||||    
T  37183077 ttgtgtaatcattacttgatcaaaaataacatattatatttataagataagatttttattt 37183137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 30941584 - 30941466
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| |||| |||||| || |||||| ||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||  | |||    
T  30941584 attggttaagcatccagaacaagtaagtttacatgaaaaagttgtgtaattattgtttgataaaaaataacatgttatatttccaagacaaaaaatgtat 30941485  T
Q  242 ttgaagattccctaaccat 260  Q
    ||||||||||| |||||||    
T  30941484 ttgaagattccttaaccat 30941466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 33148275 - 33148126
Alignment:
Q  113 taggagaatgctaactagtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 212  Q
    ||||||||||||||||| || || |||| |||  |||||||| ||||| |||||| |||| |||||||| |||||||||||||  |||||  ||| || |    
T  33148275 taggagaatgctaactaatgctcaagggcatttgttaaacattcaaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagc 33148176  T
Q  213 atcttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    ||||||||||| |||||||||||||  ||||| | ||||| |||||||||    
T  33148175 atcttatatttttaagacaaaatttcaatttgtatattccttaaccattg 33148126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 26829495 - 26829611
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||  || ||  ||| |||||||||||||||| |||||||||||| || ||| |    
T  26829495 ttaagcatctaaaataagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaatttctaattgta 26829594  T
Q  247 gattccctaaccattgc 263  Q
     ||| | ||||||||||    
T  26829595 aatttcttaaccattgc 26829611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 147 - 287
Target Start/End: Complemental strand, 8001857 - 8001717
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||| |||| |||| ||||||||||||||| ||||||||||||||||||  || ||  ||| |||||||||||||||  |||| ||||||| |||||  |    
T  8001857 ttaagcatctaaaacaagtaaattttcatgtaaaagttgtgtaatcattactttatcaaaagtaacatcttatattttcaagataaaatttctatttcta 8001758  T
Q  247 gattccctaaccattgctttaaaggcactggttaacaaaac 287  Q
    |||||| ||||||||||  | | ||||||||||| ||||||    
T  8001757 gattccttaaccattgccctgagggcactggttagcaaaac 8001717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 48579929 - 48580004
Alignment:
Q  177 aaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 252  Q
    ||||||||||||||||||| ||||||  ||||| ||||||||||||||||||||||||||| |||| | |||||||    
T  48579929 aaaaagttgtgtaatcattatttgattaaaaattacatcttatatttctaagacaaaatttctattagtagattcc 48580004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 46295991 - 46295865
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    ||||||||  |||| ||||||||| || ||| |||| ||||||||||||||| || |||  |||||  ||| |||||| ||||||||  |||| ||||||    
T  46295991 agggtatttgttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgatcaaaagtaacattttatattttcaagataaaatt 46295892  T
Q  237 tttatttgaagattccctaaccattgc 263  Q
    |||||||| ||||||| ||||||||||    
T  46295891 tttatttgtagattccttaaccattgc 46295865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 157 - 290
Target Start/End: Original strand, 11449073 - 11449206
Alignment:
Q  157 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 256  Q
    ||||||||||| |||| ||||||||||| |||||| |||   ||||  ||| |||||| |||||||| ||||||||| |||||||||| ||||||  |||    
T  11449073 aaaataagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagacaaattttttatttgtagattctttaa 11449172  T
Q  257 ccattgctttaaaggcactggttaacaaaactca 290  Q
    ||||| |  | ||||||||| ||||||| |||||    
T  11449173 ccatttccgtgaaggcactgattaacaagactca 11449206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 30109224 - 30109333
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttg-tgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 240  Q
    ||||||||||||||||||| |||||| |||| || |||||  |  |||||||||||||||||| |||||||||| ||||||||  || ||||||||| ||    
T  30109224 attgattaaacatccaaaacaagtaagttttaataaaaaaaatcatgtaatcattgtttgataaaaaataacatattatattttcaaaacaaaatttcta 30109323  T
Q  241 tttgaagatt 250  Q
    |||| |||||    
T  30109324 tttggagatt 30109333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 10226555 - 10226467
Alignment:
Q  164 gtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 252  Q
    |||| |||||||||||||||||||||||||||  || ||  ||| |||||||||||||||  |||||||||||| |||||| |||||||    
T  10226555 gtaagttttcatgaaaaagttgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttctatttgtagattcc 10226467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 5069500 - 5069614
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||| |||| ||||||| ||| ||||||| |||||||| ||||||||||  || ||  ||||||| |||||||||||  |||||||||||||||| || |    
T  5069500 ttaagcatctaaaataaataagttttcat-aaaaagttatgtaatcattactttatcaaaaataatatcttatatttacaagacaaaatttttatatgta 5069598  T
Q  247 gattccctaaccattg 262  Q
    |||||  |||||||||    
T  5069599 gattctttaaccattg 5069614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 17169390 - 17169283
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    |||||| || |||| |||| |||| || ||| |||||||||||||||||| |||| |||  || ||  |||||||||||||||||||  ||||||| |||    
T  17169390 agggtaatggttaagcatctaaaacaaataagttttcatgaaaaagttgtataataattactttatcaaaaataacatcttatattttcaagacaatatt 17169291  T
Q  237 tttatttg 244  Q
    ||||||||    
T  17169290 tttatttg 17169283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 27688492 - 27688619
Alignment:
Q  157 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 256  Q
    |||| |||||| ||||||||||||| |||||||||||||  || ||  ||| |||||||||||||||  || | |||||||| ||||| ||||||| |||    
T  27688492 aaaacaagtaagttttcatgaaaaacttgtgtaatcattactttatcaaaagtaacatcttatattttcaatataaaattttaatttgtagattccttaa 27688591  T
Q  257 ccattgctttaaaggcactggttaacaa 284  Q
    | ||| | || | | |||||||||||||    
T  27688592 caatttccttgatgacactggttaacaa 27688619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 13969216 - 13969094
Alignment:
Q  140 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttt 239  Q
    |||||| |||| || |||||| |||||| |||| |||||||| ||||||||| |||  || ||  ||| |||||| ||||||||  |||||||||||| |    
T  13969216 gtattggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttct 13969117  T
Q  240 atttgaagattccctaaccattg 262  Q
    ||||| ||||||| |||| ||||    
T  13969116 atttgtagattccttaactattg 13969094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 50015879 - 50015771
Alignment:
Q  153 atccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcc 252  Q
    |||||||| || |||||||| ||||||||||||| ||||| ||| |||||  ||| ||| ||| ||||||| ||||||||||||  |||||  |||||||    
T  50015879 atccaaaacaaataaatttttatgaaaaagttgtataatcgttgcttgatcaaaagtaatatcatatatttttaagacaaaattcctattttgagattcc 50015780  T
Q  253 ctaaccatt 261  Q
     ||| ||||    
T  50015779 ttaatcatt 50015771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 34347623 - 34347572
Alignment:
Q  144 tgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcatt 195  Q
    ||||||| ||||||||| |||||||| || ||||||||||||||||||||||    
T  34347623 tgattaagcatccaaaacaagtaaatctttatgaaaaagttgtgtaatcatt 34347572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 3529109 - 3529158
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaat 191  Q
    |||| |||| |||||||||||||||||||||||| ||||| |||||||||    
T  3529109 attggttaagcatccaaaataagtaaattttcataaaaaaattgtgtaat 3529158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 5069701 - 5069802
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| |||||||||||||| |||||| ||||||  | ||| |  ||||||||||||||  |  ||| ||||| |||||||||| |||||||||||| |||    
T  5069701 attggttaaacatccaaaacaagtaagttttcacaataaaatcatgtaatcattgtttagtcaaaagtaacaccttatatttccaagacaaaatttctat 5069800  T
Q  242 tt 243  Q
    ||    
T  5069801 tt 5069802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 40430824 - 40430877
Alignment:
Q  158 aaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataa 211  Q
    ||||||| || ||||||||||||||||||||||||||| |||| || |||||||    
T  40430824 aaataagcaagttttcatgaaaaagttgtgtaatcattatttgttaaaaaataa 40430877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 280
Target Start/End: Complemental strand, 34382733 - 34382610
Alignment:
Q  156 caaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattcccta 255  Q
    ||||| |||||| |||| || ||||||||||||||| ||||||| ||  ||||| | | ||||||||| ||||| ||| |||||||||  || || | ||    
T  34382733 caaaacaagtaactttttat-aaaaagttgtgtaattattgtttaatcaaaaattaaaacttatatttttaagataaattttttatttatagttttctta 34382635  T
Q  256 accattgctttaaaggcactggtta 280  Q
    | |||||| |||| |||||||||||    
T  34382634 atcattgccttaagggcactggtta 34382610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 39993446 - 39993496
Alignment:
Q  212 catcttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    ||||||||||||  ||||||||||||||||||| ||||| | |||||||||    
T  39993446 catcttatattttcaagacaaaatttttatttgtagatttcttaaccattg 39993496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 763233 - 763185
Alignment:
Q  193 attgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    ||||||||||  ||||||| | ||||||||||||||||| |||||||||    
T  763233 attgtttgattaaaaataaaaacttatatttctaagacataatttttat 763185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 38597446 - 38597531
Alignment:
Q  114 aggagaatgctaactagtgttcta----gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcatt 195  Q
    |||||||||||||||||||| |||    ||| |||| ||||  |||||||| |||||| |||| || |||||||||| ||||||||    
T  38597446 aggagaatgctaactagtgtactagtaggggcattggttaagtatccaaaacaagtaagttttaataaaaaagttgtctaatcatt 38597531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 38359050 - 38359166
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||||||| ||||||||||| |||||||||||||| || |||||| ||  || ||  ||| ||||||||||||||||||||| |||||||||||||  |    
T  38359050 ttaaacatctaaaataagtaagttttcatgaaaaagatgggtaatcgttactttatcaaaattaacatcttatatttctaagataaaatttttatttata 38359149  T
Q  247 gattccctaaccattgc 263  Q
    |||||| ||||||||||    
T  38359150 gattccttaaccattgc 38359166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 50958863 - 50958996
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||| ||||||||| |||||| |||| |||||||| |||||||||||||  |||||  |||||||||| ||||||||| |||||||||||| ||||||||    
T  50958863 ttaagcatccaaaacaagtaagtttttatgaaaaaattgtgtaatcatttcttgatcaaaaataacatgttatatttccaagacaaaatttctatttgaa 50958962  T
Q  247 gattccctaaccattgctttaaaggcactggtta 280  Q
     ||||  ||| ||||||  ||| | |||||||||    
T  50958963 aattctttaatcattgccctaaggacactggtta 50958996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 48338782 - 48338912
Alignment:
Q  114 aggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 212  Q
    ||||||||||||||||||| |||| ||| | || |||| ||||||||| |||||| |||| || ||||||||||||||| |||  || ||  ||||||||    
T  48338782 aggagaatgctaactagtgctctaagggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataac 48338881  T
Q  213 atcttatatttctaagacaaaatttttattt 243  Q
    |||||||||||| |||| ||||||| |||||    
T  48338882 atcttatatttccaagataaaatttctattt 48338912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 53818820 - 53818932
Alignment:
Q  138 gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 237  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||| ||||||||  |||||  ||||||| || |||||| || || |||||||||    
T  53818820 gggtattgattaagcatccaaaataaataagttttaatgaaaaagttgtataatcattacttgattaaaaataa-attttatatctccaaaacaaaattt 53818918  T
Q  238 ttatttgaagattc 251  Q
    ||||||| ||||||    
T  53818919 ttatttgtagattc 53818932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 55446736 - 55446839
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||||||| |||| |||||| |||| || |||||||||||||||||||  || ||  ||| |||||||||||||||| ||||||||||||||||||| |    
T  55446736 ttaaacatctaaaagaagtaagtttttat-aaaaagttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatttgta 55446834  T
Q  247 gattc 251  Q
    |||||    
T  55446835 gattc 55446839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 44698189 - 44698335
Alignment:
Q  116 gagaatgctaactagtgtt-ctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacat 214  Q
    ||||||||||||||||||| || | | | || ||||| ||| |||| || ||| |||| |||||||| ||||||||||||| ||| ||  ||| ||||||    
T  44698189 gagaatgctaactagtgtttctggagcaatggttaaatatctaaaacaaataagtttttatgaaaaaattgtgtaatcattattttatcaaaagtaacat 44698288  T
Q  215 cttatatttctaagacaaaatttttatttgaagattccctaaccatt 261  Q
    |||||||||  |||||||||||| |||||| ||||| | ||||||||    
T  44698289 cttatattttcaagacaaaatttctatttgtagatttcttaaccatt 44698335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 29032408 - 29032505
Alignment:
Q  140 gtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 237  Q
    |||||||||||  ||| |||| ||| || |||| ||||||||||||||||||||||  |||||  ||| ||||||||||||||| |||||||||||||    
T  29032408 gtattgattaagtatctaaaacaagcaagtttttatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaattt 29032505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 31494115 - 31494030
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaa 232  Q
    |||||||||||||| |||||| |||| |||||||| ||||||||||||| ||||||  ||| |||| ||||||||||| |||||||    
T  31494115 ttaaacatccaaaacaagtaagtttttatgaaaaaattgtgtaatcattatttgattaaaattaacttcttatatttccaagacaa 31494030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 6785915 - 6785771
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaa-gttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaat 235  Q
    ||||||||| ||||||||| |||| ||| || ||||||||||||| | ||||||||||||  |||||  ||| |||||| ||||||||  |||||||||     
T  6785915 agggtattggttaaacatcaaaaacaagcaagttttcatgaaaaaagatgtgtaatcattacttgatcaaaagtaacattttatattttcaagacaaaaa 6785816  T
Q  236 ttttatttgaagattccctaaccattgctttaaaggcactggtta 280  Q
    || |||||| ||| ||| ||||||||||  | | |||||||||||    
T  6785815 ttctatttgtagaatccttaaccattgccctgagggcactggtta 6785771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 11676865 - 11676741
Alignment:
Q  129 agtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaa 227  Q
    ||||||||| ||| |||| |||||||||||||| ||| || |||||| |||||| |||||| |||||| ||||||  ||| |||| |||| |||||  ||    
T  11676865 agtgttctaagggcattggttaaacatccaaaacaagcaagttttcaagaaaaaattgtgttatcattatttgatcaaaagtaacgtcttttattttcaa 11676766  T
Q  228 gacaaaatttttatttgaagattcc 252  Q
    |||||||||| |||||| |||||||    
T  11676765 gacaaaatttatatttgtagattcc 11676741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 263
Target Start/End: Complemental strand, 28709693 - 28709560
Alignment:
Q  130 gtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaaga 229  Q
    |||||| || |||||| |||| ||| |||||||||||| |||  || |||||||||| |||||||| ||||||  ||| |||||| ||||||||  ||||    
T  28709693 gtgttcaagagtattggttaagcattcaaaataagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaaga 28709594  T
Q  230 caaaatttttatttgaagattccctaaccattgc 263  Q
     ||||||| |||||  ||||||  ||||||||||    
T  28709593 taaaatttctatttatagattctttaaccattgc 28709560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 47334863 - 47334959
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 243  Q
    ||||||||  |||| || |||||||| ||  |||||||||||||||||| ||| ||| |||||||  |||||||||| ||||||||||||| |||||    
T  47334863 ttaaacatttaaaacaaataaatttttattgaaaagttgtgtaatcattattttataaaaaataaagtcttatatttttaagacaaaatttctattt 47334959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 4020109 - 4020216
Alignment:
Q  155 ccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccct 254  Q
    |||||| |||||| |||| |||||||| ||||||||| |||  || ||  ||| |||||| ||||||||  |||||||||||| |||||| ||||||| |    
T  4020109 ccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctatttgtagattcctt 4020208  T
Q  255 aaccattg 262  Q
    ||||||||    
T  4020209 aaccattg 4020216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 635825 - 635700
Alignment:
Q  137 agggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatt 236  Q
    |||| |||| |||| ||||||||| |  ||| |||| ||  |||||||||||||||||| ||| ||  ||| ||||||||||| | |  |||||||||||    
T  635825 agggcattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcattatttaatcaaaagtaacatcttatttattcaagacaaaatt 635726  T
Q  237 tttatttgaagattccctaaccattg 262  Q
    | |||||| ||||||| |||||||||    
T  635725 tctatttgtagattccttaaccattg 635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 49261783 - 49261880
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttg 244  Q
    |||| ||||||||| ||||| |||||||||||||| ||||||||| |||  |  ||  ||| |||||||||||||||  |||||||||||| ||||||    
T  49261783 ttaagcatccaaaacaagtacattttcatgaaaaaattgtgtaattattactctatcaaaagtaacatcttatatttacaagacaaaatttctatttg 49261880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 8326171 - 8326243
Alignment:
Q  178 aaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagatt 250  Q
    |||||| |||||||||||| |||||  ||| |||||| |||||||| ||| ||||||||| ||||||||||||    
T  8326171 aaaagtggtgtaatcattgcttgatcaaaagtaacatattatatttttaaaacaaaatttctatttgaagatt 8326243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 34146019 - 34145920
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    ||||||||| |||||||||  |||||||||| ||||| || |||| |||| |||  |||||  |||||||||||||||||||| || ||||||||| |||    
T  34146019 attgattaagcatccaaaactagtaaatttt-atgaacaaattgtataattattacttgatcaaaaataacatcttatatttccaacacaaaatttatat 34145921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 262
Target Start/End: Complemental strand, 1712068 - 1711919
Alignment:
Q  114 aggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 212  Q
    |||||||||||||| ||||| ||| |||||||| ||||||| | |||||||||||||||| |  ||||| | || |||| |||  ||  |  ||  ||||    
T  1712068 aggagaatgctaaccagtgtactaagggtattggttaaacaactaaaataagtaaatttttaataaaaaatagtataattattacttagtcaaatgtaac 1711969  T
Q  213 atcttatatttctaagacaaaatttttatttgaagattccctaaccattg 262  Q
    |||||||||||  |||||||||||| || ||  ||||||| |||||||||    
T  1711968 atcttatattttcaagacaaaatttataattttagattccttaaccattg 1711919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 4128803 - 4128727
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 223  Q
    |||| ||||||||| |||||| ||||||||||||  |||||||||||||  || ||  ||||||| |||||||||||    
T  4128803 ttaagcatccaaaacaagtaagttttcatgaaaatattgtgtaatcattactttatcaaaaataatatcttatattt 4128727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 49543174 - 49543305
Alignment:
Q  114 aggagaatgctaactagtgttctagggt-attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 212  Q
    ||||||||| ||| |||||| ||| ||  |||| |||| ||| |||||  |||||||||||||||||||  |||||||| |||  || ||| ||||| |     
T  49543174 aggagaatgttaattagtgtcctaaggacattggttaagcattcaaaacgagtaaattttcatgaaaaaagtgtgtaataattacttaatataaaatgat 49543273  T
Q  213 atcttatatttctaagacaaaatttttatttg 244  Q
    |||||||||||  |||| ||||||| ||||||    
T  49543274 atcttatattttaaagataaaatttctatttg 49543305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 25319461 - 25319562
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| ||||||||| |||| || ||| |||| ||| ||||| |||||||||||| |||  |  ||| |||||| ||||||||  || |||||||||||||    
T  25319461 attggttaaacatctaaaacaattaagttttaatgtaaaaggtgtgtaatcattatttagtcaaaagtaacattttatattttcaatacaaaatttttat 25319560  T
Q  242 tt 243  Q
    ||    
T  25319561 tt 25319562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 31904734 - 31904766
Alignment:
Q  205 aaaataacatcttatatttctaagacaaaattt 237  Q
    ||||||| |||||||||||||||||||||||||    
T  31904734 aaaataaaatcttatatttctaagacaaaattt 31904766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 1309839 - 1309720
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| ||||||||||||||||| |||||||| |||||||| |||||||||  || ||||||| ||| |||| | |||||||| ||||| ||||||| |||    
T  1309839 attggttaaacatccaaaataaataaatttttatgaaaaaattgtgtaatagttatttgataaaaagtaacgtattatatttttaagataaaatttctat 1309740  T
Q  242 ttgaagattccctaaccatt 261  Q
    ||| ||||||| ||||||||    
T  1309739 ttgtagattccttaaccatt 1309720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 287
Target Start/End: Complemental strand, 8896698 - 8896568
Alignment:
Q  157 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaa 256  Q
    |||| |||||| ||||||||||||| |||||||||||||   ||||  ||| ||||||||||||||| ||||||||||||| |||||| ||||||  |||    
T  8896698 aaaacaagtaagttttcatgaaaaaattgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatttgtagattctttaa 8896599  T
Q  257 ccattgctttaaaggcactggttaacaaaac 287  Q
     ||||| | | | ||||||||||||||||||    
T  8896598 acattgttgtgagggcactggttaacaaaac 8896568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 43626350 - 43626453
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||||||| ||||||| |||||||| |||||||| ||||||||| |||  || ||| |||||||||||| || |||  |||||||||||||||||||||    
T  43626350 ttaaacatctaaaataaataaatttttatgaaaaaattgtgtaattattactttataaaaaataacatctaattttttcaagacaaaatttttatttgaa 43626449  T
Q  247 gatt 250  Q
    ||||    
T  43626450 gatt 43626453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 23142797 - 23142660
Alignment:
Q  114 aggagaatgctaactagtgt-tctagggtattgattaaacatccaaaataagtaaattttcatgaaaaa-gttgtgtaatcattgtttgatagaaaataa 211  Q
    ||||||||| |||| ||||| || || | |||| ||||||||||||||||||||| |||| |||||||| |||||||||| |||  |||||  |||||||    
T  23142797 aggagaatgttaacgagtgtctcaagagcattggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaaataa 23142698  T
Q  212 catcttatatttctaagacaaaatttttatttgaagatt 250  Q
    ||||||||||||| || ||||||||| |||||| |||||    
T  23142697 catcttatatttccaa-acaaaatttctatttgtagatt 23142660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 37928274 - 37928420
Alignment:
Q  119 aatgctaactagtgt-tctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatctt 217  Q
    ||||||||||||||| || |||  |||| ||||||||||||||||||||| |||| || ||||||||||||||| |||  || ||  |||||||||| ||    
T  37928274 aatgctaactagtgtctcaaggacattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacatttt 37928373  T
Q  218 atatttctaagacaaaatttttatttgaagattccctaaccattgct 264  Q
    ||||||  |||| ||||||| |||||  ||||||  |||||||||||    
T  37928374 atattttcaagataaaatttatatttatagattctttaaccattgct 37928420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 16979912 - 16980035
Alignment:
Q  115 ggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataaca 213  Q
    |||||||||||||| ||| |||| ||| |||| |||| ||||||||| ||||||||||| ||||||||||||||| || |||  | |||  ||| |||||    
T  16979912 ggagaatgctaactggtgctctaagggcattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaaca 16980011  T
Q  214 tcttatatttctaagacaaaattt 237  Q
    ||||||||||  ||||||||||||    
T  16980012 tcttatattttcaagacaaaattt 16980035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 31487826 - 31487725
Alignment:
Q  141 tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 240  Q
    ||||| ||||||||||||||||| ||| |||| | |||||| ||||||||| |||  || ||| |||||||||||||||||||| |||| ||||||| ||    
T  31487826 tattggttaaacatccaaaataaataagtttttaagaaaaaattgtgtaattattacttaataaaaaataacatcttatatttccaagataaaatttcta 31487727  T
Q  241 tt 242  Q
    ||    
T  31487726 tt 31487725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 34993241 - 34993148
Alignment:
Q  144 tgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 237  Q
    ||||||| |||| |||  |||||| ||||||||||||||||||||||| ||| ||| ||  ||| ||||||||||||||| |||||||||||||    
T  34993241 tgattaagcatctaaatcaagtaagttttcatgaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaaattt 34993148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 31850836 - 31850762
Alignment:
Q  169 ttttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttattt 243  Q
    |||| |||||||| || |||||||||| ||| ||  ||| |||||||||||||||||||||||||||||||||||    
T  31850836 tttttatgaaaaaattatgtaatcattattttattaaaagtaacatcttatatttctaagacaaaatttttattt 31850762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 8746149 - 8746234
Alignment:
Q  157 aaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatt 242  Q
    ||||||||||| |||| ||||||||||||| |||||||| ||||||  ||| ||||||  |||||||  |||||||||||||||||    
T  8746149 aaaataagtaagtttttatgaaaaagttgtataatcattatttgatcaaaagtaacattctatatttacaagacaaaatttttatt 8746234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 16685728 - 16685848
Alignment:
Q  141 tattgattaaacatccaaaataagtaaattttcatg-aaaaagttgtgtaatcattgtttgatagaaaa-taacatcttatatttctaagacaaaatttt 238  Q
    ||||| |||| |||||||||||||||| |||| ||  |||||||||||||||||||  |||||  || | |||||||||||||||| ||||||||| ||     
T  16685728 tattggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttc 16685827  T
Q  239 tatttgaagattccctaacca 259  Q
    |||| | ||||||| ||||||    
T  16685828 tattagtagattccttaacca 16685848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 141 - 259
Target Start/End: Original strand, 17659964 - 17660084
Alignment:
Q  141 tattgattaaacatccaaaataagtaaattttcatg-aaaaagttgtgtaatcattgtttgatagaaaa-taacatcttatatttctaagacaaaatttt 238  Q
    ||||| |||| |||||||||||||||| |||| ||  |||||||||||||||||||  |||||  || | |||||||||||||||| ||||||||| ||     
T  17659964 tattggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttc 17660063  T
Q  239 tatttgaagattccctaacca 259  Q
    |||| | ||||||| ||||||    
T  17660064 tattagtagattccttaacca 17660084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 30027931 - 30028041
Alignment:
Q  112 gtaggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaata 210  Q
    |||||||||||||||| |||||  || ||||| || ||||||||||| || ||||||  ||||||||||||||||||| ||||||  || ||  ||| ||    
T  30027931 gtaggagaatgctaaccagtgtcataagggtaatggttaaacatccataacaagtaagatttcatgaaaaagttgtgtgatcattactttatcaaaagta 30028030  T
Q  211 acatcttatat 221  Q
    |||||||||||    
T  30028031 acatcttatat 30028041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 43118809 - 43118946
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    |||| ||||||||| |||||| |||| |||||||| ||| ||||| | | ||||||  ||  |||||||| ||||||  |||||||||||| |||||| |    
T  43118809 ttaatcatccaaaacaagtaagttttaatgaaaaaattgcgtaattactatttgatcaaatgtaacatctcatattttcaagacaaaatttatatttgta 43118908  T
Q  247 gattccctaaccattgctttaaaggcactggttaacaa 284  Q
    |||| | ||||||||||  |  |||||| |||||||||    
T  43118909 gatttcttaaccattgccctggaggcaccggttaacaa 43118946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 34993147 - 34993092
Alignment:
Q  208 ataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgc 263  Q
    ||||||||||||||||  |||||||||||| |||||| ||||||| ||||||||||    
T  34993147 ataacatcttatattttcaagacaaaatttatatttgtagattccttaaccattgc 34993092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 1554067 - 1554025
Alignment:
Q  209 taacatcttatatttctaagacaaaatttttatttgaagattc 251  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  1554067 taacatcttatatttctaagacaacatttttatttgtagattc 1554025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 259
Target Start/End: Original strand, 19676965 - 19677110
Alignment:
Q  115 ggagaatgctaactagtgttcta-gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataaca 213  Q
    ||||||||||||||||||  | | ||| |||| |||| ||||| ||| ||| || ||||  || ||||| ||||||||||||  || ||  ||| |||||    
T  19676965 ggagaatgctaactagtgccccaagggcattggttaagcatcctaaacaagcaagttttggtgtaaaaggtgtgtaatcattacttaatcaaaagtaaca 19677064  T
Q  214 tcttatatttctaagacaaaatttttatttgaagattccctaacca 259  Q
    ||||||||||  |||||||||||| ||||||  |||||| ||||||    
T  19677065 tcttatattttcaagacaaaatttctatttgtcgattccttaacca 19677110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 261
Target Start/End: Complemental strand, 25530650 - 25530541
Alignment:
Q  152 catccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattc 251  Q
    ||||||||| || ||| |||| |||||||| |||||||||||||  || ||  ||  |||||| |||||||||||||| ||||||| ||||| || ||||    
T  25530650 catccaaaacaaataagtttttatgaaaaaattgtgtaatcattactttatcaaatgtaacattttatatttctaagataaaatttctatttaaaaattc 25530551  T
Q  252 cctaaccatt 261  Q
      ||||||||    
T  25530550 tttaaccatt 25530541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 1521311 - 1521261
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgt 197  Q
    |||||||||||||| |||||| ||| ||||||||| ||| |||||||||||    
T  1521311 ttaaacatccaaaacaagtaagtttccatgaaaaaattgcgtaatcattgt 1521261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 243
Target Start/End: Complemental strand, 12810291 - 12810161
Alignment:
Q  113 taggagaatgctaactagtgttctagggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 212  Q
    |||||||||| ||||  |||| | |||| | || ||||||||| |||| ||| |   |||||||||||||||||||||| |||  ||  |  ||| |||     
T  12810291 taggagaatgttaaccggtgtccaagggcaatggttaaacatctaaaacaagcatgctttcatgaaaaagttgtgtaattattactttgtcaaaagtaat 12810192  T
Q  213 atcttatatttctaagacaaaatttttattt 243  Q
    ||||||||||| |||||||||||||| ||||    
T  12810191 atcttatatttttaagacaaaattttcattt 12810161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 42888306 - 42888420
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaa 246  Q
    ||||||||| ||||||||||| |||||||  |||| ||||| |||||||  || ||  |||  ||||||||||||||  |||  ||||  |||||||| |    
T  42888306 ttaaacatctaaaataagtaagttttcatagaaaatttgtgcaatcattactttatcaaaagcaacatcttatattttcaagttaaaaaatttatttgta 42888405  T
Q  247 gattccctaaccatt 261  Q
    |||||| ||||||||    
T  42888406 gattccttaaccatt 42888420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 22931973 - 22931924
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaat 191  Q
    |||| ||||||| ||||||||||||||||||||  ||||||| |||||||    
T  22931973 attggttaaacaaccaaaataagtaaattttcaataaaaagtagtgtaat 22931924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 27235256 - 27235349
Alignment:
Q  147 ttaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattttta 240  Q
    |||||||||||||| ||| || ||||||   |||| |  |||||||||| |||  || |||||||||  ||||||||| |||||||||||||||    
T  27235256 ttaaacatccaaaacaagaaagttttcacacaaaaatgatgtaatcattatttagtaaaaaataacactttatatttccaagacaaaattttta 27235349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 23080723 - 23080659
Alignment:
Q  159 aataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatattt 223  Q
    ||||| |||||||| |||||||| || ||||||||||  |||||  ||| |||||||||||||||    
T  23080723 aataaataaatttttatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatattt 23080659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 142 - 262
Target Start/End: Original strand, 51644 - 51764
Alignment:
Q  142 attgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttat 241  Q
    |||| ||||||||||||||||| |||||||| |||||||| || ||||||||||  || ||  ||| |||||| ||||||||| ||||||||| ||||||    
T  51644 attggttaaacatccaaaataaataaatttttatgaaaaaattatgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttat 51743  T
Q  242 ttgaagattccctaaccattg 262  Q
    ||| | ||||| |||||||||    
T  51744 ttgtaaattccttaaccattg 51764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 36565 - 36668
Alignment:
Q  177 aaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaatttttatttgaagattccctaaccattgctttaaaggcactg 276  Q
    |||||||||| |||||||| ||| ||  ||| |||||||||||||||  || |||||||||||||||||||||||  ||| |||| | |||||||||| |    
T  36565 aaaaagttgtataatcattatttaatcaaaagtaacatcttatattttcaaaacaaaatttttatttgaagattctttaatcattaccttaaaggcaccg 36664  T
Q  277 gtta 280  Q
    ||||    
T  36665 gtta 36668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 120638 - 120789
Alignment:
Q  114 aggagaatgctaactagtgttctaggg-tattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataac 212  Q
    |||| |||| |||| ||||||||| || || || ||||||||||||||||||||| ||||  || |||||||||| |||| ||  || |   ||| | ||    
T  120638 aggacaatgttaaccagtgttctaaggataatggttaaacatccaaaataagtaagtttttgtggaaaagttgtgcaatcgttactttaccaaaagtgac 120737  T
Q  213 atcttatatttctaagacaaaatttttatttgaagattccctaaccattgct 264  Q
    |||||||||||  |||||||||||| |||||| ||||||| |||||||||||    
T  120738 atcttatattttcaagacaaaatttctatttgtagattccttaaccattgct 120789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 15485 - 15380
Alignment:
Q  138 gggtattgattaaacatccaaaataagtaaattttcatgaaaaagttgtgtaatcattgtttgatagaaaataacatcttatatttctaagacaaaattt 237  Q
    |||||||| |||||||| |||||||||||| |||| ||||||||  ||| ||||| ||  ||| |  ||| |||||||||||||||  ||||||||| ||    
T  15485 gggtattggttaaacattcaaaataagtaagtttttatgaaaaatgtgtataatcgttacttggtcaaaagtaacatcttatattttcaagacaaaaatt 15386  T
Q  238 ttattt 243  Q
     |||||    
T  15385 ctattt 15380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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