View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13802_low_9 (Length: 471)
Name: NF13802_low_9
Description: NF13802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13802_low_9 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 38726058 - 38725632
Alignment:
| Q |
1 |
atatgcttttaggtggaaagaaacagttgggccaagggaagagagatccggccactggaacgacgtttacagttattggagtgacgatggattaggttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38726058 |
atatgcttttaggtggaaagaaacagttgggccaagggaagagagatccggccactggaacgacgtttacagttattggagtgacgatggattaggttat |
38725959 |
T |
|
| Q |
101 |
tttgaaggtctccaactagcagaggatcttggtgcattacctatatgggtgtttaatgccggtattagccgtagcgatgaaattagtaccgctaacattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725958 |
tttgaaggtctccaactagcagaggatcttggtgcattacctatatgggtgtttaatgccggtattagccgtagcgatgaaattagtaccgctaacattg |
38725859 |
T |
|
| Q |
201 |
gaccatgggtacaagaagccctagatggtattgagtttgctagaggtcatgccaattcacaatggggttctgttagggcttccatgggacattctcaacc |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38725858 |
gaccatgggtgcaagaagccctagatggtattgagtttgctagaggtcatgccaattcacaatggggttctgttagggcttccatgggacatcctcaacc |
38725759 |
T |
|
| Q |
301 |
atttaatttgaaatttgttgctattggaaatgaagattgtggtatgcagtactatgaaggaaattacatgaaattttacgaagctatgaaaagtgcttat |
400 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
38725758 |
atgtaatttgaaatttgttgctattggaaatgaagattgtggtatgcagtactatgaaggaaattacatgaaattttacgaagctataaaacgtacttat |
38725659 |
T |
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| Q |
401 |
cctgatattcaaattatgtcaaactgc |
427 |
Q |
| |
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| T |
38725658 |
cctgatattcaaattatctcaaactgc |
38725632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 30860 - 30981
Alignment:
| Q |
215 |
gaagccctagatggtattgagtttgctagaggtcatgccaattcacaatggggttctgttagggcttccatgggacattctcaaccatttaatttgaaat |
314 |
Q |
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||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| ||||||||||||||| || | |||||| |||||| || |
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| T |
30860 |
gaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggacatcctgagccatttgatttgagat |
30959 |
T |
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| Q |
315 |
ttgttgctattggaaatgaaga |
336 |
Q |
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||||||| |||||||||||||| |
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| T |
30960 |
ttgttgccattggaaatgaaga |
30981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 34164039 - 34164160
Alignment:
| Q |
215 |
gaagccctagatggtattgagtttgctagaggtcatgccaattcacaatggggttctgttagggcttccatgggacattctcaaccatttaatttgaaat |
314 |
Q |
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||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| ||||||||||||||| || | |||||| |||||| || |
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| T |
34164039 |
gaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggacatcctgagccatttgatttgagat |
34164138 |
T |
|
| Q |
315 |
ttgttgctattggaaatgaaga |
336 |
Q |
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||||||| |||||||||||||| |
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| T |
34164139 |
ttgttgccattggaaatgaaga |
34164160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 34170536 - 34170657
Alignment:
| Q |
215 |
gaagccctagatggtattgagtttgctagaggtcatgccaattcacaatggggttctgttagggcttccatgggacattctcaaccatttaatttgaaat |
314 |
Q |
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||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| ||||||||||||||| || | |||||| |||||| || |
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| T |
34170536 |
gaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggacatcctgagccatttgatttgagat |
34170635 |
T |
|
| Q |
315 |
ttgttgctattggaaatgaaga |
336 |
Q |
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||||||| |||||||||||||| |
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| T |
34170636 |
ttgttgccattggaaatgaaga |
34170657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 34214135 - 34214256
Alignment:
| Q |
215 |
gaagccctagatggtattgagtttgctagaggtcatgccaattcacaatggggttctgttagggcttccatgggacattctcaaccatttaatttgaaat |
314 |
Q |
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||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| ||||||||||||||| || | |||||| |||||| || |
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| T |
34214135 |
gaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggacatcctgagccatttgatttgagat |
34214234 |
T |
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| Q |
315 |
ttgttgctattggaaatgaaga |
336 |
Q |
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||||||| |||||||||||||| |
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| T |
34214235 |
ttgttgccattggaaatgaaga |
34214256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 340
Target Start/End: Original strand, 34465559 - 34465672
Alignment:
| Q |
227 |
ggtattgagtttgctagagg-tcatgccaattcacaatggggttctgttagggcttccatgggacattctcaaccatttaatttgaaatttgttgctatt |
325 |
Q |
| |
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|||||||||||||||||||| |||| ||| |||| ||||||| |||||||| || || |||||||| | |||| ||||| | |||| |||||||||| |
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| T |
34465559 |
ggtattgagtttgctagaggttcat-ccacttcaaaatggggctctgttagagcatctatgggacacccaaaaccttttaacctaaaatatgttgctatt |
34465657 |
T |
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| Q |
326 |
ggaaatgaagattgt |
340 |
Q |
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|| || ||||||||| |
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| T |
34465658 |
ggtaacgaagattgt |
34465672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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