View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13803_high_1 (Length: 662)
Name: NF13803_high_1
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13803_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 25 - 645
Target Start/End: Complemental strand, 28887774 - 28887153
Alignment:
| Q |
25 |
caataagagagtggtggaaacagagacgttagaaatataagttgattcaattgataaagagttgactcatatcttataaaagtatgagttcaattttcac |
124 |
Q |
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|||| ||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28887774 |
caatcagagagttgtggaaaaagagacgttaaaaatataagttgattcagttgataaagagttgactcatatcttataaaagtatgagttcaattttcac |
28887675 |
T |
|
| Q |
125 |
tattaatgtgataacttacttctttagttaaagtctaccctaacctctggtaaattttaaaactcaactcatctaaaattttctttattaaaaaacaata |
224 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28887674 |
tattaatgtgataaattacttctttagttaaagtctgccctaacctctggtaaattttaaaactcaactcatctaaaattttcattattaaaaaacaata |
28887575 |
T |
|
| Q |
225 |
aaccagatatttatgtgtttcacttaataatttcaattgaaatattttctggacatcaaacannnnnnnn-agaggtagacatcaaacagttatcaaata |
323 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |
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| T |
28887574 |
aaacggatatttatgtgtttcacttaataatttcaattgaaatattttctagacatcaaacatttttttttagaggtagacatcaaacaattatcaaata |
28887475 |
T |
|
| Q |
324 |
ctaaaaagcaaaaacacaatcaaacaagtcataattatatattgagtaatgtatatacattaaaaactcacattttgttggggggaaagtgaatgggata |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |
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| T |
28887474 |
ctaaaaagcaaaaacacaatcaaacaagtcataattatatattgagtaatgtatatactttaaaaactcacatgttgttgggggaaaagtgaatgggata |
28887375 |
T |
|
| Q |
424 |
tcattttccttcccttaaaccaactattattagtatgtgagtgacaacgaagtcacaaagtttatcatctcttttcatacatgaccttcttgaaagtcag |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28887374 |
tcattttccttcccttaaaccaactattattagtatgtgagtgacaacgaagtcacaaagtttatcatctcttttcatacatgaccttcttgaaagccag |
28887275 |
T |
|
| Q |
524 |
ctccacttccttctattgtgatatcatgtggaacatcaccattatgaatagtcccactagaaccaagagccaactttaagacatcatattctccatccac |
623 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28887274 |
ctccacttccttctattgtgatatcatctgaaacatcaccattatgaatagttgcgcaagaaccaagagccaactttaagatatcatattctccatccac |
28887175 |
T |
|
| Q |
624 |
ccaaaccaaaccctcctttggt |
645 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
28887174 |
ccaaaccaaaccctcctttggt |
28887153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 380 - 629
Target Start/End: Complemental strand, 28882411 - 28882164
Alignment:
| Q |
380 |
acattaaaaactcacattttgttggggggaaa-gtgaatgggatatcattttccttcccttaaaccaactattattagtatgtgagtgacaacgaagtca |
478 |
Q |
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| T |
28882411 |
acattaaaaacttatattttaatggggggaaaagtgaatgagatatcatttcccttcccttaaaccaactattactagtatgtgagtgacaacaaagtca |
28882312 |
T |
|
| Q |
479 |
caaagtttatcatctcttttcatacatgaccttcttgaaagtcagctccacttccttctattgtgatatcatgtggaacatcaccattatgaatagtccc |
578 |
Q |
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| T |
28882311 |
caaagtttatcatcacttttcatacatg---gacttgatagccttgtgcacctccttctattgtgatatcatttaaaatgtcaccattaggaatagtcct |
28882215 |
T |
|
| Q |
579 |
actagaaccaagagccaactttaagacatcatattctccatccacccaaac |
629 |
Q |
| |
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|| ||||||||||| || |||||||||| |||||||| |||| ||||||| |
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| T |
28882214 |
acaagaaccaagaggcagctttaagacaacatattcttcatcatcccaaac |
28882164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 641
Target Start/End: Complemental strand, 28889169 - 28889101
Alignment:
| Q |
573 |
agtcccactagaaccaagagccaactttaagacatcatattctccatccacccaaaccaaaccctcctt |
641 |
Q |
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|||||||| | |||| | ||||||| |||||| || |||||||||||| |||||||||||||||||||| |
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| T |
28889169 |
agtcccacaaaaacccatagccaaccttaagatatgatattctccatcaacccaaaccaaaccctcctt |
28889101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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