View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13803_high_4 (Length: 435)
Name: NF13803_high_4
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13803_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 40291697 - 40291909
Alignment:
| Q |
18 |
ccaaggatctgaaagtatgatttcatgtcaaaataagcatgatcagtgcttttattgtttgttgtttgcagggaacagaagagattggacctaacaatct |
117 |
Q |
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| T |
40291697 |
ccaaggatctgaaagtatgatttcatgtcaaaataagcatgatcagtgcttttattgtttgttgtttgcagggaacagaagagattggacctaacaatct |
40291796 |
T |
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| Q |
118 |
caccttttcatcttcgagatagctcgatatttcagacggctcaaattttgatcctacagcaggtaatacaaaatcagtggcaccacatgcacacgatcag |
217 |
Q |
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| T |
40291797 |
caccttttcatcttcgagatagctcgatatttcagacggctcaaattttgatccttcagcaggtaatacaaaatcagtggcaccacatgcacacgatcag |
40291896 |
T |
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| Q |
218 |
tcccgtcatcctt |
230 |
Q |
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| T |
40291897 |
tcccgtcatcctt |
40291909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 310 - 422
Target Start/End: Original strand, 40292009 - 40292121
Alignment:
| Q |
310 |
ggctcaaggagggacagaaattgaatttaagaaagtaacaacaaaaattgcattagagaaacagaaacaaactacacaccaggtaccatggaacctcttt |
409 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40292009 |
ggctcaaggagggacagaaattgaatttaagaaaataacaacaaaaattgcattagagaaacagaaacaaactacacaccaggtaccatggaacctcttt |
40292108 |
T |
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| Q |
410 |
tggaattgatgat |
422 |
Q |
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| T |
40292109 |
tggaattgatgat |
40292121 |
T |
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