View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13803_high_5 (Length: 246)
Name: NF13803_high_5
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13803_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 5328491 - 5328731
Alignment:
| Q |
1 |
gtaatgataaggaagtttcttctctatgcgctatttgtgtgcacaacaatgtgtatagacagatagtaatgagaattaggctagtgttattctcaaaata |
100 |
Q |
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| T |
5328491 |
gtaatgataaggaagtttcttctctatgcgctatttgtgtgcacaacaatgtatatagacggatagtaatgagaattaggctagtgttattctcaaaata |
5328590 |
T |
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| Q |
101 |
aaacattgtatactcatatagtaaagagaatgaggttagtgtaactaggaattgactactagagtgattgaaatctcatgtttatttttcttgttcttct |
200 |
Q |
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| T |
5328591 |
aaacattgtatacacatatagtaaagagaatgaggttggtgtaactaggaattgactacaagagtgattgaaatcacatgtttatttttcttgttcttct |
5328690 |
T |
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| Q |
201 |
aataaaaacaacaaatcctcaaaagaattatcgagtattat |
241 |
Q |
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| T |
5328691 |
aataaaaacaacaaatcctcaaaataattatcaagtgttat |
5328731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 5317119 - 5317033
Alignment:
| Q |
2 |
taatgataaggaagtttcttctctatgcgctatt--tgtgtgcacaacaatgtgtatagacagatagtaatgagaattaggctagtgtta |
89 |
Q |
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| T |
5317119 |
taatgataaggaagtcgcttctctatgcgctatttatgtgtgcacaaca---tgtatagatagatagtaatgagaattagattagtgtta |
5317033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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