View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13803_low_10 (Length: 235)
Name: NF13803_low_10
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13803_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5328441 - 5328222
Alignment:
| Q |
1 |
aaaagcacgaacaacttctgaaggatgctcgtgaatggataaaagggacagcccagtcatgttcagcggtagctgtccttgtcgcgacagttgtctttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
5328441 |
aaaagcacgaacaacttctgaaggatgctcgtgaatggataaaagggacagcccagtcatgttctgcggtagctgcccttgtcgcgacagttgtctttgc |
5328342 |
T |
|
| Q |
101 |
ggcagcttacactgtccctggaggcacagacgaccgcggcttcccaaggttactccatcatcctatatttgtagtgttcatggtcatggatgttgtggca |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5328341 |
ggcagcttacactgtcccgggaggcacagacgaccacggcttcccaaggttactccatcatcctatatttgtagtgttcatggtcatggatgttgtggca |
5328242 |
T |
|
| Q |
201 |
cttgcaagttcattggcatc |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5328241 |
cttgcaagttcattggcatc |
5328222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 5317178 - 5317386
Alignment:
| Q |
9 |
gaacaacttctgaaggatgctcgtgaatggataaaagggacagcccagtcatgttcagcggtagctgtccttgtcgcgacagttgtctttgcggcagctt |
108 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || |||| |
|
|
| T |
5317178 |
gaacaactgctgaaggatgctcgcgaatggatcaaagagacagctcagtcatgttctgcggtagctgtccttgttgcgacagttgtctttgcagctgctt |
5317277 |
T |
|
| Q |
109 |
acactgtccctggaggcacagacgaccgcggcttcccaaggttactccatcatcctatatttgtagtgttcatggtcatggatgttgtggcacttgcaag |
208 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||||| ||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5317278 |
acacggtcccaggaggcacagacgactacggcttgccaagattacttcatcatcctatattcgtagtgttcacagtcatggatgttgtggcccttgcaag |
5317377 |
T |
|
| Q |
209 |
ttcattggc |
217 |
Q |
| |
|
||||||||| |
|
|
| T |
5317378 |
ttcattggc |
5317386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University