View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13803_low_11 (Length: 228)
Name: NF13803_low_11
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13803_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 54692796 - 54692577
Alignment:
| Q |
1 |
ctcaggtagcacacagtcaaagtcaaacacttggctttccatttcctagctaattcagcctaataaaagagtttcttgctcactattggcagaagagagt |
100 |
Q |
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| T |
54692796 |
ctcaggtagcacacagtcaaagtcaaacacttggctttccatttccaagctaattcagcctaataaaagagtttcttgctcactattggcagaagagagt |
54692697 |
T |
|
| Q |
101 |
gaattttctcaagtatggatgtagcattgcaatcctttgtgtttaacaagattagcaagtttgaagaagtgaatgatctccaaaacaaattggagaaaat |
200 |
Q |
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| T |
54692696 |
gaattttctcaagtatggatgtagcattgcaatcctttgtgtttaacaagattagcaagtttgaagaagtaaatgatctccaaaacaaattggagaaaat |
54692597 |
T |
|
| Q |
201 |
ggagttgtgtattcaagact |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
54692596 |
ggagttgtgtattcaagact |
54692577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 54700144 - 54699961
Alignment:
| Q |
11 |
acacagtcaaagtcaaacacttggctttccatttcctagctaattcagcctaataaaagagtttcttgctcactattggcagaagagagtgaattttctc |
110 |
Q |
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| T |
54700144 |
acacagtcaaaatcaaacagctggggttccatttccaaacttattcagccgaa---aagagttgcttgctcactattgacagatgaaagtgaattttccc |
54700048 |
T |
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| Q |
111 |
aagtatggatgtagcattgcaatcctttgtgtttaacaagattagcaagtttgaagaagtgaatgatctccaaaacaaattggagaaaa |
199 |
Q |
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| T |
54700047 |
aag--tggatgtagcattgcagtcctttgtatttaccaagaatagaaaagttgaaggcatcaatgatctccaaaaccacttggagaaaa |
54699961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 54688200 - 54688084
Alignment:
| Q |
10 |
cacacagtcaaagtcaaacacttggctttccatttcctagctaattcagcctaataaaagagtttcttgctcactattggcagaagagagtgaattttct |
109 |
Q |
| |
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|||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||| ||||| ||| ||||||| || ||||||||| | |
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| T |
54688200 |
cacacagtcaaagtcaaacagctggggttccatttccaagctaattcagcc---caaaagagtttcctgctccctagtggcagatgaaagtgaatttgcc |
54688104 |
T |
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| Q |
110 |
caagtatggatgtagcattgca |
131 |
Q |
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|||| |||||| ||||||||| |
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| T |
54688103 |
caag--tggatggagcattgca |
54688084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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