View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13803_low_12 (Length: 226)
Name: NF13803_low_12
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13803_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 10343284 - 10343104
Alignment:
| Q |
1 |
gtaatgatatattcttgatacctagtataatat--ctcttctacataagctaatacatatcaaataaacttgaaaaatggtaaacaaaacacactagtgg |
98 |
Q |
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| T |
10343284 |
gtaatgatatattcttgatacctagtataatatagctcttctacataagctaatacatatcaaataaacttgaaaaatagtaaacaaaacacactagtgg |
10343185 |
T |
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| Q |
99 |
catgttaaaccatgcaataaaacccaatttggtgatcttggcgataacacaaagtagagagggtcacaataaaaccttcaaa |
180 |
Q |
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| T |
10343184 |
catgttaaaccatgcaataaaacccaatttggtgatcttggcgatagcacaaagtagagagggtcacaat-aaaccttcaaa |
10343104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 2759709 - 2759744
Alignment:
| Q |
92 |
ctagtggcatgttaaaccatgcaataaaacccaatt |
127 |
Q |
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| T |
2759709 |
ctagtggcatgttaaaccatgcaataaaacccaatt |
2759744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 2768962 - 2768998
Alignment:
| Q |
91 |
actagtggcatgttaaaccatgcaataaaacccaatt |
127 |
Q |
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| T |
2768962 |
actagtggcatgttaaaccatgcactaaaacccaatt |
2768998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 2769505 - 2769541
Alignment:
| Q |
91 |
actagtggcatgttaaaccatgcaataaaacccaatt |
127 |
Q |
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|||||| |||||||||||||| ||||||||||||||| |
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| T |
2769505 |
actagttgcatgttaaaccattcaataaaacccaatt |
2769541 |
T |
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