View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13803_low_2 (Length: 519)
Name: NF13803_low_2
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13803_low_2 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 75 - 519
Target Start/End: Complemental strand, 40292543 - 40292099
Alignment:
| Q |
75 |
ttgattattgatgttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatg |
174 |
Q |
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| T |
40292543 |
ttgattattgatgttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatg |
40292444 |
T |
|
| Q |
175 |
gttgtttcaatttctggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttc |
274 |
Q |
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| T |
40292443 |
gttgtttcaatttctggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttc |
40292344 |
T |
|
| Q |
275 |
aatttctgacgagcatgaataatcactttcattttagccctttgcaactaatactgcacctgttttctaattttctttttaggtagaggaacattatctt |
374 |
Q |
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| T |
40292343 |
aatttctgacgagcatgaataatcactttcattttagccctttgcaactaatactgcacctgttttctaattttctttttaggtagaggaacattatctt |
40292244 |
T |
|
| Q |
375 |
aaaaagattgagcgaaaagagaaatgcgagtgtgctattgagcacaaaaagacatgcaattatgctgatcccttttttgacaagaatgatgttttttcat |
474 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
40292243 |
aaaaaggttgagcgaaaagagaaatgcgagtgtgctattgagcacaaaaagacatgcagttatgctgattccttttttgacaagaatgatgttttttcat |
40292144 |
T |
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| Q |
475 |
ggacacaaccttctaggctcatatcatcaattccaaaagaggttc |
519 |
Q |
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| T |
40292143 |
ggacacagcattctaggctcatatcatcaattccaaaagaggttc |
40292099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 69 - 294
Target Start/End: Complemental strand, 40285276 - 40285051
Alignment:
| Q |
69 |
tactacttgattattgatgttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaatta |
168 |
Q |
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|||||||||||| |||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||| |||| ||| |
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| T |
40285276 |
tactacttgattcttgatgaagcaatttgtgctgctgtggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggtta |
40285177 |
T |
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| Q |
169 |
cctatggttgtttcaatttctggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgta |
268 |
Q |
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| T |
40285176 |
ccattgcttgttgcaatttctggcaacgttgtttctgaaaccccaattaagtgcgagataactggtttaagaggtgtaatagttgaagaaagagtatgta |
40285077 |
T |
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| Q |
269 |
gacttcaatttctgacgagcatgaat |
294 |
Q |
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| T |
40285076 |
gacttcaatttctgactagcatgaat |
40285051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 40292839 - 40292764
Alignment:
| Q |
1 |
agtaacataactgatgtaagtttcaattgtgatgaaggagagtttagatgaactttcattgtctttcttactactt |
76 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
40292839 |
agtaacataactgatgtaagtttctattgtgatgaaggagagttcagatgaactttcatcgtctttcttactactt |
40292764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 104 - 298
Target Start/End: Complemental strand, 40258063 - 40257870
Alignment:
| Q |
104 |
tgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttctggcgaagttgcttt |
203 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||| || |||||||| |||||||||| ||| | || |
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| T |
40258063 |
tgtggtttctgatcatccttgggattcttgttttttcagcacaactgttggatgaagaaatatttcccttggttgttgcaatttctggaagagtgggttc |
40257964 |
T |
|
| Q |
204 |
tgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttcaatttctgacgagcatgaataatc |
298 |
Q |
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| T |
40257963 |
tgaaactccaattagctgcgagttcagtggtttaagaggtgttataattgaagaaacagtatgtatacttc-atttctgaaaagcatgaataatc |
40257870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 72 - 284
Target Start/End: Complemental strand, 40266541 - 40266330
Alignment:
| Q |
72 |
tacttgattattgatgttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacct |
171 |
Q |
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|||| ||||||| ||| ||||||||| |||||| ||||||| |||| |||| |||||| ||| |||||| |||| || |||||| ||||| || || |
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| T |
40266541 |
tactagattatttatgatgcaatttgtgctgctacggtttctaatcatacttgagattct-cacgtttcagaacaattgctggatggagaaagatcacac |
40266443 |
T |
|
| Q |
172 |
atggttgtttcaatttctggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaagtgtatgtagac |
271 |
Q |
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|||||||| |||||||||| |||| || |||||||||||| |||||| || | | |||||||| ||||| ||||||| |||| |||||||||| |
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| T |
40266442 |
ttggttgttgcaatttctgggtgtgttgtttctgaaaccccaattaagtgcgagttgactggtttaagaggtgttgtagttgaagaaacagtatgtagac |
40266343 |
T |
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| Q |
272 |
ttcaatttctgac |
284 |
Q |
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| T |
40266342 |
ttcaatttctgac |
40266330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 279
Target Start/End: Complemental strand, 40272740 - 40272587
Alignment:
| Q |
126 |
gattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttctggcgaagttgcttttgaaaccccaatcaagtgcaag |
225 |
Q |
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|||||||||||||||||| || ||| |||||||| | | |||||| | ||||||| ||||||||||| ||||| || |||| ||||||| | | || || |
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| T |
40272740 |
gattcttcacttttcagctcatctgatggatgcaaatatattacccagggttgttacaatttctggcagagttgtttgtgaagccccaattacgggcgag |
40272641 |
T |
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| Q |
226 |
attagcggtttaagtggtgtaatagttgacgaaagtgtatgtagacttcaattt |
279 |
Q |
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| || |||||| | |||| |||||| || ||| | ||||||| |||||||||| |
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| T |
40272640 |
ttgagtggtttaggaggtgcaatagtcgaagaacgagtatgtaaacttcaattt |
40272587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 40257841 - 40257775
Alignment:
| Q |
303 |
tcattttagccctttgcaactaatactgcacctgttttctaattttctttttaggtagaggaacatt |
369 |
Q |
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||||||| ||||||| ||||||| |||| ||||||||| ||||||||||||||| |||| |||||| |
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| T |
40257841 |
tcattttggccctttacaactaacactgaacctgttttacaattttctttttaggcagagcaacatt |
40257775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 40272545 - 40272472
Alignment:
| Q |
303 |
tcattttagccctttgcaactaatactgcacctgttttctaattttctttttaggtagaggaacattatcttaaa |
377 |
Q |
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| T |
40272545 |
tcattttagtcctttgcaacta-tattatacctgttttgcaatttttttattaggtagaggaacatcatcttaaa |
40272472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 43461246 - 43461498
Alignment:
| Q |
4 |
aacataactgatgtaagtttcaattgtgatgaaggagagtttagatgaactttcattgtctttcttactacttgattattgatgttgcaatttgggctgc |
103 |
Q |
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|||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |
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| T |
43461246 |
aacataactgatgtaagtttatgcagtgatgaagtagagcttagatgaactttcattatctt----actacttgattattgatgttgcaatttgggatgc |
43461341 |
T |
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| Q |
104 |
tgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttctggcgaagttgcttt |
203 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
43461342 |
tgtggtttctgacgacgcttgggatttttcactttttagcacaactgttggatgcggaaaaattacccttggttgtttcaatttctgacgaagttgcttc |
43461441 |
T |
|
| Q |
204 |
tgaaaccccaatcaagtgcaagattagcggtttaagtggtgtaatagttgacgaaag |
260 |
Q |
| |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
43461442 |
tgaaaccccaatcaagtgcgagattagtagtttaagtggtgtaatagttgacgaaag |
43461498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 156
Target Start/End: Original strand, 7076371 - 7076519
Alignment:
| Q |
4 |
aacataactgatgtaagtttcaattgtgatgaaggagagtttagatgaactttcattgtctttcttactacttgattattgatgttgcaatttgggctgc |
103 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| || |
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| T |
7076371 |
aacataactgatgtaagtttttgcagtgatgaagtagagcttagatgaagtttcattatctt----actacttgattattgatgttgcaatttgggccgc |
7076466 |
T |
|
| Q |
104 |
tgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggat |
156 |
Q |
| |
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||||||||||| |||||| ||||| ||||||||| ||||||| |||||||| |
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| T |
7076467 |
cgtggtttctgacgacgctttggatttttcactttttagcacaattgttggat |
7076519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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