View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13803_low_3 (Length: 498)
Name: NF13803_low_3
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13803_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 22950102 - 22950542
Alignment:
| Q |
18 |
atgaatgtacagtcagcagcacccttgtgaaactcaaaccggattttgcttgcctgtatgattgtattgtagtagcattgaaatgtaagtcaaaagaagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22950102 |
atgaatgtacagtcagcagcacccttgtgaaactcaaaccggattttgcttgcctgtatgattgtattgtagtagcattgaaatgtaagtcaaat----- |
22950196 |
T |
|
| Q |
118 |
agaagaaagaaaaactaatgcaacgtatggtttttaaaattgtcaattaaatggttctacattgcatattatctgaagaaaaattcaaatatgcttcacc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22950197 |
---------------taatgcaacgtatggtttttaaaattgtcaattaattggttctacattgcatattatctgaagaaaaattcaaatatgcttcacc |
22950281 |
T |
|
| Q |
218 |
taccctactgggacagtcaagattgtgcttcttcatcaatggcaatttaaaaagtcacaaggttttattgtttcatcatttcaatgcccaatggtcaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22950282 |
taccctactgggacagtcaagattgtgcttcttcatcaatggcaatttaaaaagtcacaaggttttattgtttcatcatttcaatgcccaatggtcaata |
22950381 |
T |
|
| Q |
318 |
tataactataactatatagtacaaagaagactaaatcttgaccacagaatttctatgataggagaagcatacatgaatgatagagattaaaagtttttag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22950382 |
tataactataactatatagtacaaagaagactaaatcttgaccacagaatttctatgataggagaagcatacatgaatgatagagattaaaagtttttag |
22950481 |
T |
|
| Q |
418 |
tcacacatctatttaagattgtcaaatgactatattgtttttagtcacacaccgtatcaga |
478 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22950482 |
tcacacatctatttaagagtgtcaaatgactatattgtttttagtcacacaccgtatcaga |
22950542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University