View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13803_low_7 (Length: 317)
Name: NF13803_low_7
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13803_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 31384733 - 31384501
Alignment:
| Q |
10 |
aaaataacattaaacagtacaagattacagaggtttgcaaaaccagggaagggaagagaaaatccacaatacacatttctaagcttccaagttagcttac |
109 |
Q |
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| T |
31384733 |
aaaataacattaaacagtacaagattacagaggtttgcaaaaccagggaagggaagagaaaatccacaatacacatttctaagcttccaagttagcttac |
31384634 |
T |
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| Q |
110 |
cacaatatcatcatcatgcaaggaacagaccaataactgaacacttaatgcaaggaacagaccaataactaatcacttaatatatgcagaactagaaagt |
209 |
Q |
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| T |
31384633 |
cacaatatcatcatcatgcaaggaacagaccaataactgaacacttaatgcaaggaacagaccaataactaatcacttaatatatgcagaactagaaagt |
31384534 |
T |
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| Q |
210 |
ataattattaaataaaaacaacatgatggtggt |
242 |
Q |
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| T |
31384533 |
ataattattaaataaaaacaacatgatggtggt |
31384501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 54471800 - 54471731
Alignment:
| Q |
233 |
tgatggtggtggtgatgatgatgaatctggtggagacgaattttgagcgtctggtcctggagaagattct |
302 |
Q |
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| T |
54471800 |
tgatggtggtggtgatgatgatgaatctggtggagacgaattttgagcgtctggtcctggagaagattct |
54471731 |
T |
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