View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13803_low_8 (Length: 266)

Name: NF13803_low_8
Description: NF13803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13803_low_8
NF13803_low_8
[»] chr7 (5 HSPs)
chr7 (10-151)||(43427226-43427362)
chr7 (10-94)||(14753971-14754056)
chr7 (212-255)||(2943779-2943822)
chr7 (212-266)||(1052776-1052830)
chr7 (212-266)||(11038902-11038956)
[»] chr4 (7 HSPs)
chr4 (29-147)||(47223979-47224094)
chr4 (213-260)||(8819013-8819060)
chr4 (213-266)||(36464517-36464570)
chr4 (216-260)||(51357556-51357600)
chr4 (212-242)||(33340959-33340989)
chr4 (212-266)||(41041798-41041852)
chr4 (212-241)||(29117366-29117395)
[»] chr3 (4 HSPs)
chr3 (86-148)||(52632844-52632906)
chr3 (12-100)||(52632916-52633004)
chr3 (218-266)||(21288457-21288505)
chr3 (52-135)||(32836800-32836884)
[»] chr6 (5 HSPs)
chr6 (50-106)||(17930206-17930262)
chr6 (212-266)||(10408658-10408712)
chr6 (213-266)||(641746-641799)
chr6 (212-241)||(28582524-28582553)
chr6 (212-241)||(35167028-35167057)
[»] chr5 (2 HSPs)
chr5 (212-266)||(3926554-3926608)
chr5 (213-265)||(42837869-42837921)
[»] chr8 (2 HSPs)
chr8 (213-266)||(31006393-31006446)
chr8 (212-242)||(28211655-28211685)


Alignment Details
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 43427362 - 43427226
Alignment:
Q  10 tcatcacattaaacgaaaacaaagttccttacttaaaagtaacataaacaaagttcatcatatataactaaaacaaagcttcttgattcaataaattcat 109  Q
    |||||||||| ||| || ||||||||   | |||||||  |||||| | |||||||||||||| ||  ||||||||||||||||||||||| ||||||      
T  43427362 tcatcacatttaacaaatacaaagtt---tgcttaaaaaaaacatacataaagttcatcatattta--taaaacaaagcttcttgattcaacaaattctc 43427268  T
Q  110 gttgataagtttaattatgtaatttatttaatttaatagtgg 151  Q
      |||||||||||||||||||||||  |||||||||||||||    
T  43427267 aatgataagtttaattatgtaatttgcttaatttaatagtgg 43427226  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 14754056 - 14753971
Alignment:
Q  10 tcatcacattaaacgaaaacaaagttcctt-acttaaaagtaacataaacaaagttcatcatatataactaaaacaaagcttcttg 94  Q
    |||||||||| ||| ||||| ||||||||| | |||| |  |||||||| |||||||||||||| |||| ||||||||| ||||||    
T  14754056 tcatcacatttaacaaaaactaagttccttgatttaacacaaacataaataaagttcatcatatttaacaaaaacaaagtttcttg 14753971  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 2943822 - 2943779
Alignment:
Q  212 gtagttaaaatatccgtttattttatccataaacatccgttaag 255  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||    
T  2943822 gtagttaaaatatccgtttattttacccataaatatccattaag 2943779  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 1052830 - 1052776
Alignment:
Q  212 gtagttaaaatatccgtttattttatccataaacatccgttaagatatcagctcc 266  Q
    ||||||||||||||||||||||||||||||  | |||| ||||| |||| |||||    
T  1052830 gtagttaaaatatccgtttattttatccatggatatccattaaggtatccgctcc 1052776  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 11038956 - 11038902
Alignment:
Q  212 gtagttaaaatatccgtttattttatccataaacatccgttaagatatcagctcc 266  Q
    |||||||||| ||||||||||||||||||| || |||| ||||| |||| |||||    
T  11038956 gtagttaaaaaatccgtttattttatccatgaatatccattaaggtatctgctcc 11038902  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 47223979 - 47224094
Alignment:
Q  29 caaagttccttacttaaaagtaacataaacaaagttcatcatatataactaaaacaaagcttcttgattcaataaattcatgttgataagtttaattatg 128  Q
    ||||||||||| ||||||   |||||||| |||||||||   || |||| ||||||||||||||| |||||||||||||    ||||||||||||||| |    
T  47223979 caaagttcctttcttaaagaaaacataaataaagttcat---atttaacaaaaacaaagcttcttaattcaataaattcccagtgataagtttaattacg 47224075  T
Q  129 taatttatttaatttaata 147  Q
    ||||||| |||||||||||    
T  47224076 taatttacttaatttaata 47224094  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 8819060 - 8819013
Alignment:
Q  213 tagttaaaatatccgtttattttatccataaacatccgttaagatatc 260  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||||    
T  8819060 tagttaaaatatccgtttattttatccatgaatatccgttaaggtatc 8819013  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 36464570 - 36464517
Alignment:
Q  213 tagttaaaatatccgtttattttatccataaacatccgttaagatatcagctcc 266  Q
    |||||||||||||||||||||||||||||  | |||||||||| |||| |||||    
T  36464570 tagttaaaatatccgtttattttatccatggatatccgttaaggtatccgctcc 36464517  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 51357556 - 51357600
Alignment:
Q  216 ttaaaatatccgtttattttatccataaacatccgttaagatatc 260  Q
    ||||||||||||||||||||||||||||| |||| ||||| ||||    
T  51357556 ttaaaatatccgtttattttatccataaatatccattaaggtatc 51357600  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 33340959 - 33340989
Alignment:
Q  212 gtagttaaaatatccgtttattttatccata 242  Q
    |||||||||||||||||||||||||||||||    
T  33340959 gtagttaaaatatccgtttattttatccata 33340989  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 41041798 - 41041852
Alignment:
Q  212 gtagttaaaatatccgtttattttatccataaacatccgttaagatatcagctcc 266  Q
    |||||||||| |||| ||||||||||||||||| |||| ||||| |||| |||||    
T  41041798 gtagttaaaaaatccatttattttatccataaatatccattaaggtatccgctcc 41041852  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 29117366 - 29117395
Alignment:
Q  212 gtagttaaaatatccgtttattttatccat 241  Q
    ||||||||||||||||||||||||||||||    
T  29117366 gtagttaaaatatccgtttattttatccat 29117395  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 52632906 - 52632844
Alignment:
Q  86 agcttcttgattcaataaattcatgttgataagtttaattatgtaatttatttaatttaatag 148  Q
    ||||||||||||||| |||||  || ||||||| |||||||||||||||| ||||||||||||    
T  52632906 agcttcttgattcaacaaatttgtggtgataagcttaattatgtaatttacttaatttaatag 52632844  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 52633004 - 52632916
Alignment:
Q  12 atcacattaaacgaaaacaaagttccttacttaaaagtaacataaacaaagttcatcatatataactaaaacaaagcttcttgattcaa 100  Q
    |||||||| ||| ||||||||||| ||| ||||||| ||||||||| | | | ||||||||  ||| |||| | |||||||||||||||    
T  52633004 atcacatttaacaaaaacaaagtttcttgcttaaaaataacataaatacaatacatcatattcaacaaaaatatagcttcttgattcaa 52632916  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 21288457 - 21288505
Alignment:
Q  218 aaaatatccgtttattttatccataaacatccgttaagatatcagctcc 266  Q
    |||| |||||||||||||||||||| | |||| |||||||||| |||||    
T  21288457 aaaaaatccgtttattttatccatagatatccattaagatatccgctcc 21288505  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 32836800 - 32836884
Alignment:
Q  52 cataaacaaagttcatcatatataactaaaacaaagcttcttgattcaataaa-ttcatgttgataagtttaattatgtaattta 135  Q
    |||||| ||||||||||||||  ||| |||  ||||||||||||||||| ||| || | |||| |||| ||| ||||||||||||    
T  32836800 cataaataaagttcatcatattcaacaaaagtaaagcttcttgattcaacaaatttaaggttggtaagattatttatgtaattta 32836884  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 17930262 - 17930206
Alignment:
Q  50 aacataaacaaagttcatcatatataactaaaacaaagcttcttgattcaataaatt 106  Q
    |||||||| ||||||||||||||  ||| |||||||||||||||||||||| |||||    
T  17930262 aacataaataaagttcatcatattcaacaaaaacaaagcttcttgattcaagaaatt 17930206  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 10408712 - 10408658
Alignment:
Q  212 gtagttaaaatatccgtttattttatccataaacatccgttaagatatcagctcc 266  Q
    |||||| ||||||||||||||||||||||| || |||| ||||| |||| |||||    
T  10408712 gtagttgaaatatccgtttattttatccatgaatatccattaaggtatccgctcc 10408658  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 641799 - 641746
Alignment:
Q  213 tagttaaaatatccgtttattttatccataaacatccgttaagatatcagctcc 266  Q
    |||||||||||||||||||||||||||||  | |||| |||| ||||| |||||    
T  641799 tagttaaaatatccgtttattttatccatggatatccattaaaatatccgctcc 641746  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 28582524 - 28582553
Alignment:
Q  212 gtagttaaaatatccgtttattttatccat 241  Q
    ||||||||||||||||||||||||||||||    
T  28582524 gtagttaaaatatccgtttattttatccat 28582553  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 35167057 - 35167028
Alignment:
Q  212 gtagttaaaatatccgtttattttatccat 241  Q
    ||||||||||||||||||||||||||||||    
T  35167057 gtagttaaaatatccgtttattttatccat 35167028  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 3926554 - 3926608
Alignment:
Q  212 gtagttaaaatatccgtttattttatccataaacatccgttaagatatcagctcc 266  Q
    |||||||||| |||||||||||||||||||| | |||| |||||||||| |||||    
T  3926554 gtagttaaaaaatccgtttattttatccatagatatccattaagatatccgctcc 3926608  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 42837869 - 42837921
Alignment:
Q  213 tagttaaaatatccgtttattttatccataaacatccgttaagatatcagctc 265  Q
    ||||||||| |||||||||||||||||||| | |||| |||||||||| ||||    
T  42837869 tagttaaaaaatccgtttattttatccatagatatccattaagatatccgctc 42837921  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 31006393 - 31006446
Alignment:
Q  213 tagttaaaatatccgtttattttatccataaacatccgttaagatatcagctcc 266  Q
    |||||||||||||||||||||||||||||  | |||| |||||||||| |||||    
T  31006393 tagttaaaatatccgtttattttatccatggatatccattaagatatccgctcc 31006446  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Complemental strand, 28211685 - 28211655
Alignment:
Q  212 gtagttaaaatatccgtttattttatccata 242  Q
    |||||||||||||||||||||||||||||||    
T  28211685 gtagttaaaatatccgtttattttatccata 28211655  T

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