View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13804_high_2 (Length: 272)
Name: NF13804_high_2
Description: NF13804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13804_high_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 64 - 272
Target Start/End: Complemental strand, 19198256 - 19198048
Alignment:
| Q |
64 |
ggaaacctgaccctcaaagagagactacaacaggatcaaacaatggggagacaagtgcatatgtattggatgaaactttgatcgacaagatcaaacaatg |
163 |
Q |
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| T |
19198256 |
ggaaacctgaccctcaaagagagactacaacaggatcaaacaatggggagacaagtgcagatgtatgggagaaaactgtgatcgacaagatcaaataatg |
19198157 |
T |
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| Q |
164 |
ggcaaatatacaggagagaacagagcccgacaagatcaaacaaaggtacttggaagcaggattacattgaatttctaacaaagaaaacactctcaaacat |
263 |
Q |
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| T |
19198156 |
ggcagataaacaggagagaactgagcccgacaagatcaaccaaaggtacttggaagcaggattacattgaatttctaacaaagaaaacactctcaaacat |
19198057 |
T |
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| Q |
264 |
aactagaat |
272 |
Q |
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| T |
19198056 |
aactagaat |
19198048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 19202128 - 19202032
Alignment:
| Q |
176 |
ggagagaacagagcccgacaagatcaaacaaaggtacttggaagcaggattacattgaatttctaacaaagaaaacactctcaaacataactagaat |
272 |
Q |
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| T |
19202128 |
ggagagaactgagctcgagaagatcaaacaaaggtacttggaagtaggattacattgaatctgtaacaaagaaaacagtctcaaacagaactagaat |
19202032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 19202207 - 19202140
Alignment:
| Q |
55 |
agactacagggaaacctgaccctcaaagagagactacaacaggatcaaacaatggggagacaagtgca |
122 |
Q |
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| T |
19202207 |
agacttcagagaaacctggccctctaagacagactacaacaggatcaaacaatggggagacaaatgca |
19202140 |
T |
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