View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13804_high_3 (Length: 257)

Name: NF13804_high_3
Description: NF13804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13804_high_3
NF13804_high_3
[»] chr5 (4 HSPs)
chr5 (1-242)||(28398445-28398681)
chr5 (2-238)||(28390616-28390854)
chr5 (4-47)||(28398401-28398444)
chr5 (109-145)||(11079726-11079762)
[»] chr4 (4 HSPs)
chr4 (103-145)||(24572075-24572117)
chr4 (103-145)||(35765451-35765493)
chr4 (109-142)||(13216735-13216768)
chr4 (109-145)||(53840257-53840293)
[»] chr8 (3 HSPs)
chr8 (109-145)||(72804-72840)
chr8 (109-142)||(14976838-14976871)
chr8 (109-142)||(37044091-37044124)
[»] chr3 (2 HSPs)
chr3 (103-145)||(49906845-49906887)
chr3 (113-145)||(39722098-39722130)
[»] chr1 (2 HSPs)
chr1 (113-145)||(13694161-13694193)
chr1 (109-149)||(25089836-25089876)
[»] scaffold0018 (1 HSPs)
scaffold0018 (120-162)||(147234-147276)
[»] chr7 (1 HSPs)
chr7 (117-145)||(5467643-5467671)
[»] chr6 (2 HSPs)
chr6 (109-145)||(29064880-29064916)
chr6 (109-145)||(29119734-29119770)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 28398445 - 28398681
Alignment:
Q  1 tggtacttaagttataatttatctatatttttactcatatatcaatacggctacctctttactttgtagtatatcaatacatgtacctatttgttatttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| |||||||    
T  28398445 tggtacttaagttataatttatctatatttttactcatatatcaatacggctacctctttactc----gtatatcaatacatgtacctattttttatttc 28398540  T
Q  101 tattttacatttatacacatgtctatatttttattcatatatcaacatgaattcctaattttattaaattatacatgtgttctactggtcttgttgtctt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  28398541 tattttacatttatacacatgtctatatttttagtcatatatcaacatggattcctaattttgttaaattatacatgtgttctact-gtcttgttgtctt 28398639  T
Q  201 gatttatttctaacacaatgaaaaagatttatctgaacaaag 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28398640 gatttatttctaacacaatgaaaaagatttatctgaacaaag 28398681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 28390616 - 28390854
Alignment:
Q  2 ggtacttaagttataatttatctatatttttactcatatatcaatacggctacctctttactttgtagtatatcaatacatgtacctatttgtt-atttc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   || ||||||||||||||||| ||||| || ||||     
T  28390616 ggtacctaagttataatttatctatatttttactcatatatcaatacggttacctctttactca-ta-tatatcaatacatgtacttatttttttatttt 28390713  T
Q  101 tatttta--catttatacacatgtctatattttt-attcatatatcaacatgaattcctaattttattaaattatacatgtgttctactggtcttgttgt 197  Q
    ||||||   ||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| ||||  |||||| |||||||| || |||||||||    
T  28390714 tatttttttcatttatacacgtgtctatattttttagtcatatatcaacatgaattcctaattttgttaagctatacacgtgttctattgttcttgttgt 28390813  T
Q  198 cttgatttatttctaacacaatgaaaaagatttatctgaac 238  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  28390814 cttgatttatttccaacacaatgaaaaagatttatccgaac 28390854  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 28398401 - 28398444
Alignment:
Q  4 tacttaagttataatttatctatatttttactcatatatcaata 47  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28398401 tacttaagttataatttatctatatttttactcatatatcaata 28398444  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 11079726 - 11079762
Alignment:
Q  109 atttatacacatgtctatatttttattcatatatcaa 145  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  11079726 atttatacatatgtctatatttttattcaaatatcaa 11079762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 24572117 - 24572075
Alignment:
Q  103 ttttacatttatacacatgtctatatttttattcatatatcaa 145  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  24572117 ttttccatttatacacatgtctatatttttattcatatatcaa 24572075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 35765493 - 35765451
Alignment:
Q  103 ttttacatttatacacatgtctatatttttattcatatatcaa 145  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  35765493 ttttaaatttatacacatgtctatatttttattcatatatcaa 35765451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 13216768 - 13216735
Alignment:
Q  109 atttatacacatgtctatatttttattcatatat 142  Q
    |||||||||||||||||||||||||||| |||||    
T  13216768 atttatacacatgtctatatttttattcgtatat 13216735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 53840257 - 53840293
Alignment:
Q  109 atttatacacatgtctatatttttattcatatatcaa 145  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  53840257 atttatacacatgcctatattttaattcatatatcaa 53840293  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 72840 - 72804
Alignment:
Q  109 atttatacacatgtctatatttttattcatatatcaa 145  Q
    |||||||||||||||||||||||||||||||||||||    
T  72840 atttatacacatgtctatatttttattcatatatcaa 72804  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 14976838 - 14976871
Alignment:
Q  109 atttatacacatgtctatatttttattcatatat 142  Q
    ||||||||||||||||||||||||||||||||||    
T  14976838 atttatacacatgtctatatttttattcatatat 14976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 37044091 - 37044124
Alignment:
Q  109 atttatacacatgtctatatttttattcatatat 142  Q
    ||||||||||||||||||||||||| ||||||||    
T  37044091 atttatacacatgtctatatttttactcatatat 37044124  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 49906845 - 49906887
Alignment:
Q  103 ttttacatttatacacatgtctatatttttattcatatatcaa 145  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  49906845 ttttaaatttatacacttgtctatatttttattcatatatcaa 49906887  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 39722098 - 39722130
Alignment:
Q  113 atacacatgtctatatttttattcatatatcaa 145  Q
    ||||||||| |||||||||||||||||||||||    
T  39722098 atacacatgcctatatttttattcatatatcaa 39722130  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 13694161 - 13694193
Alignment:
Q  113 atacacatgtctatatttttattcatatatcaa 145  Q
    |||||||||||||||||||||||||||||||||    
T  13694161 atacacatgtctatatttttattcatatatcaa 13694193  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 25089836 - 25089876
Alignment:
Q  109 atttatacacatgtctatatttttattcatatatcaacatg 149  Q
    ||||||||| || |||||||||||| |||||||||||||||    
T  25089836 atttatacaaatctctatatttttactcatatatcaacatg 25089876  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 147234 - 147276
Alignment:
Q  120 tgtctatatttttattcatatatcaacatgaattcctaatttt 162  Q
    |||||||||||||||||||||||||||| || | |||||||||    
T  147234 tgtctatatttttattcatatatcaacacgagtacctaatttt 147276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 5467671 - 5467643
Alignment:
Q  117 acatgtctatatttttattcatatatcaa 145  Q
    |||||||||||||||||||||||||||||    
T  5467671 acatgtctatatttttattcatatatcaa 5467643  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 29064916 - 29064880
Alignment:
Q  109 atttatacacatgtctatatttttattcatatatcaa 145  Q
    |||| |||| |||||||||||||||||||||||||||    
T  29064916 atttgtacatatgtctatatttttattcatatatcaa 29064880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 29119770 - 29119734
Alignment:
Q  109 atttatacacatgtctatatttttattcatatatcaa 145  Q
    |||| |||| |||||||||||||||||||||||||||    
T  29119770 atttgtacatatgtctatatttttattcatatatcaa 29119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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