View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13804_low_1 (Length: 332)

Name: NF13804_low_1
Description: NF13804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13804_low_1
NF13804_low_1
[»] chr5 (3 HSPs)
chr5 (3-184)||(28398007-28398184)
chr5 (186-332)||(28398248-28398393)
chr5 (188-331)||(28390398-28390540)
[»] chr3 (3 HSPs)
chr3 (285-331)||(25735582-25735628)
chr3 (296-329)||(25735471-25735504)
chr3 (294-330)||(39721981-39722017)
[»] chr8 (4 HSPs)
chr8 (288-331)||(37044081-37044124)
chr8 (186-242)||(43488063-43488118)
chr8 (296-329)||(37044154-37044187)
chr8 (296-332)||(72806-72842)
[»] chr4 (1 HSPs)
chr4 (288-331)||(32742996-32743039)
[»] chr6 (1 HSPs)
chr6 (294-330)||(6261239-6261275)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 28398007 - 28398184
Alignment:
Q  3 aacataggacaaccactaattcaagagttccaactatttgttacgacattctagcagtcttcataaagtgtccacaacttgagaaatctaaatttgtcat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28398007 aacataggacaaccactaattcaagagttccaactatttgttacgacattctagcagtcttcataaagtgtccacaacttgagaaatctaaatttgtcat 28398106  T
Q  103 agcatgaggttgtcactatttctaattaatttcattgatacaaaactgaaaaattataataggaaaaatgttataccaatgt 184  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28398107 agcatgaggttgtcactatttc----taatttcattgatacaaaactgaaaaataataataggaaaaatgttataccaatgt 28398184  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 186 - 332
Target Start/End: Original strand, 28398248 - 28398393
Alignment:
Q  186 atatttgtgagtgataaatataaataaaaaa-tacgagacaaatatttgtgagtgatatggatattcttacattttttcagcatctatcaatatggtgac 284  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| ||||||    
T  28398248 atatttgtgagtgataaatataaataaaaaaatacgagacaaatatttgtgagtgat--gaatattcttacattttttcagcatctatcaataaggtgac 28398345  T
Q  285 atatttttctgtaatttatacacatatctatatttttactcatatatc 332  Q
    ||| |||| |||||||||||||    ||||||||||||||||||||||    
T  28398346 ataattttttgtaatttatacatgcgtctatatttttactcatatatc 28398393  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 188 - 331
Target Start/End: Original strand, 28390398 - 28390540
Alignment:
Q  188 atttgtgagtgataaatataaataaaaaatacgagacaaatatttgtgagtgatatggatattcttacattttttca-gcatctatcaatatggtgacat 286  Q
    ||||||| ||||||||||||||| ||| ||||| ||| ||||||||||||||||  ||| ||||||||||||||| | |||| |||||||||||||||||    
T  28390398 atttgtgggtgataaatataaatcaaatatacgggaccaatatttgtgagtgat--ggacattcttacatttttttatgcatatatcaatatggtgacat 28390495  T
Q  287 atttttctgtaatttatacacatatctatatttttactcatatat 331  Q
    |||||||||||||| ||| | | ||||||||||||||||||||||    
T  28390496 atttttctgtaattcatatatacatctatatttttactcatatat 28390540  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 25735628 - 25735582
Alignment:
Q  285 atatttttctgtaatttatacacatatctatatttttactcatatat 331  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  25735628 atatttttctgtaatttatacacgtatctatatttttactcatatat 25735582  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 25735504 - 25735471
Alignment:
Q  296 taatttatacacatatctatatttttactcatat 329  Q
    |||||||||||||| |||||||||||||||||||    
T  25735504 taatttatacacatgtctatatttttactcatat 25735471  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 39721981 - 39722017
Alignment:
Q  294 tgtaatttatacacatatctatatttttactcatata 330  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  39721981 tgtaatttatatacatgtctatatttttactcatata 39722017  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 37044081 - 37044124
Alignment:
Q  288 tttttctgtaatttatacacatatctatatttttactcatatat 331  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  37044081 tttttttgtaatttatacacatgtctatatttttactcatatat 37044124  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 43488118 - 43488063
Alignment:
Q  186 atatttgtgagtgataaatataaataaaaaatacgagacaaatatttgtgagtgata 242  Q
    |||||||| | |||||||||||| ||||||||||| ||||||||||||| |||||||    
T  43488118 atatttgtcactgataaatataa-taaaaaatacgggacaaatatttgttagtgata 43488063  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 37044154 - 37044187
Alignment:
Q  296 taatttatacacatatctatatttttactcatat 329  Q
    |||||||||||||| |||||||||||||||||||    
T  37044154 taatttatacacatgtctatatttttactcatat 37044187  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 72842 - 72806
Alignment:
Q  296 taatttatacacatatctatatttttactcatatatc 332  Q
    |||||||||||||| |||||||||||| |||||||||    
T  72842 taatttatacacatgtctatatttttattcatatatc 72806  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 32743039 - 32742996
Alignment:
Q  288 tttttctgtaatttatacacatatctatatttttactcatatat 331  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||    
T  32743039 tttttttgtaatttatacacatgtctatacttttactcatatat 32742996  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 6261239 - 6261275
Alignment:
Q  294 tgtaatttatacacatatctatatttttactcatata 330  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  6261239 tgtaatttatatacatgtctatatttttactcatata 6261275  T

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