View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13805_high_13 (Length: 316)

Name: NF13805_high_13
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13805_high_13
NF13805_high_13
[»] chr8 (4 HSPs)
chr8 (11-186)||(447546-447721)
chr8 (197-299)||(447757-447859)
chr8 (104-186)||(16345662-16345744)
chr8 (79-186)||(23545596-23545703)
[»] scaffold0094 (1 HSPs)
scaffold0094 (1-299)||(24833-25129)
[»] chr4 (7 HSPs)
chr4 (7-133)||(37762009-37762135)
chr4 (83-181)||(2610628-2610726)
chr4 (107-184)||(25197565-25197642)
chr4 (220-268)||(2610790-2610838)
chr4 (199-258)||(52577913-52577972)
chr4 (209-266)||(43001630-43001687)
chr4 (90-147)||(53650410-53650467)
[»] chr5 (10 HSPs)
chr5 (27-186)||(14920689-14920852)
chr5 (196-284)||(14920887-14920975)
chr5 (105-179)||(11305854-11305928)
chr5 (105-181)||(32097758-32097833)
chr5 (99-166)||(28043036-28043103)
chr5 (203-278)||(32097632-32097707)
chr5 (221-250)||(7961277-7961306)
chr5 (105-149)||(12831505-12831549)
chr5 (105-149)||(12863480-12863524)
chr5 (209-269)||(31124181-31124241)
[»] chr2 (5 HSPs)
chr2 (1-158)||(129008-129175)
chr2 (197-299)||(129231-129333)
chr2 (90-179)||(20535317-20535406)
chr2 (105-181)||(32609947-32610022)
chr2 (221-278)||(32609825-32609882)
[»] chr6 (4 HSPs)
chr6 (1-186)||(33548449-33548634)
chr6 (197-299)||(33548670-33548772)
chr6 (199-258)||(11324396-11324455)
chr6 (203-257)||(34018123-34018177)
[»] chr1 (6 HSPs)
chr1 (79-185)||(38274051-38274160)
chr1 (203-269)||(48610917-48610983)
chr1 (209-250)||(22583311-22583352)
chr1 (211-248)||(29642151-29642188)
chr1 (203-251)||(3926703-3926751)
chr1 (210-258)||(25529972-25530020)
[»] chr3 (9 HSPs)
chr3 (79-184)||(34291982-34292090)
chr3 (109-186)||(14760251-14760328)
chr3 (100-177)||(13758219-13758296)
chr3 (79-186)||(16237843-16237953)
chr3 (220-257)||(20017554-20017591)
chr3 (203-258)||(44781773-44781828)
chr3 (204-258)||(14788796-14788850)
chr3 (221-278)||(34291863-34291920)
chr3 (205-258)||(35503856-35503909)
[»] scaffold0078 (1 HSPs)
scaffold0078 (92-177)||(280-365)
[»] scaffold0027 (2 HSPs)
scaffold0027 (105-179)||(45162-45236)
scaffold0027 (203-268)||(45048-45113)
[»] scaffold0003 (1 HSPs)
scaffold0003 (105-179)||(291019-291093)
[»] chr7 (9 HSPs)
chr7 (100-184)||(16560120-16560204)
chr7 (100-184)||(16605458-16605542)
chr7 (203-258)||(16560020-16560075)
chr7 (203-258)||(16605587-16605642)
chr7 (105-179)||(41216198-41216272)
chr7 (105-154)||(7694375-7694424)
chr7 (209-268)||(14315513-14315572)
chr7 (203-269)||(37237914-37237980)
chr7 (105-179)||(42017820-42017894)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 447546 - 447721
Alignment:
Q  11 tgtactagaaaagaaccagagtcataaacatatgtgcaaagaaaaacagtaaaaccgaaacaaggtacacagagaaagaaa-cattaatcgatgtccaac 109  Q
    |||||||| |||||| || ||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||| |||||    
T  447546 tgtactaggaaagaaaca-agtcacaaacatatgtacaaagaaaaaaagtaaaaccaaaacaaggtacacagagaaagaaaacattaaccgatgaccaac 447644  T
Q  110 atagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacacaaaaga 186  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  447645 atagtgaatggattaagccaccaaacatggtaattgaaggagagatttgcgattttcgccttcaaccacacaaaaga 447721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 447757 - 447859
Alignment:
Q  197 aacaaactttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaagagcataatgtagtgccacatcttaga 296  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || ||||||    
T  447757 aacaaactttgccattgaatatcctgttgtttctttccttccatatttcccacaccgtagcataccaaatcaagagcataatggagtgccgcaccttaga 447856  T
Q  297 aca 299  Q
    |||    
T  447857 aca 447859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 16345662 - 16345744
Alignment:
Q  104 tccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacacaaaaga 186  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||| ||||||    
T  16345662 tccaacatagtgaacggactaagccaccaaacgtggtagttgaaagagagatttgcgattttcgccttcaaccacataaaaga 16345744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 23545703 - 23545596
Alignment:
Q  79 acagagaaagaaacattaatcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccac 178  Q
    |||||||||||||||||| || |||||||||||||||||  |||||| ||||||| ||||||||||| ||||||| ||||   ||||||||||||||||     
T  23545703 acagagaaagaaacattagtcaatgtccaacatagtgaatggactaaaccaccaagcatggtaattggaggagaggtttggttttttcgccttcaaccaa 23545604  T
Q  179 acaaaaga 186  Q
     |||||||    
T  23545603 ccaaaaga 23545596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 24833 - 25129
Alignment:
Q  1 tagtataaggtgtactagaaaagaaccagagtcataaacatatgtgcaaagaaaaa--cagtaaaaccgaaacaaggtacacagagaaaga-aacattaa 97  Q
    ||||| ||||||||| | |||||||||||||||| | | | |||| ||||||||||  ||||||||||  ||||||||| ||| ||||||| ||||||||    
T  24833 tagtaaaaggtgtaccaaaaaagaaccagagtcacatataaatgtacaaagaaaaaaacagtaaaaccagaacaaggtatacaaagaaagacaacattaa 24932  T
Q  98 tcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacacaaaagacaagaacttaa 197  Q
     ||||| |||||||| |||   |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| | | ||||||    
T  24933 ccgatgcccaacatactgattggactaagccaccaagcatggtaattgaaggagagatttgcgattttcaccttcaaccacacaaaagaaacggacttaa 25032  T
Q  198 acaaactttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaagagcataatgtagtgccacatcttagaa 297  Q
     |     ||  ||||||| ||  ||||||||||||| ||||| | |  ||||||||||||||| |||||| || |||||||| |||||| || |||||||    
T  25033 tc-----ttatcattgaaaatcttgttgtttctttctttccaaactgtccacaccgtagcataccaaatccagtgcataatggagtgccgcaccttagaa 25127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 37762009 - 37762135
Alignment:
Q  7 aaggtgtactagaaaagaaccagagtcataaacatatgtgcaaagaaaaacagtaaaaccgaaacaaggtacacagagaaagaaacattaatcgatgtcc 106  Q
    ||||||||| || ||||||||||||||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  37762009 aaggtgtaccaggaaagaaccagagtcacagacatatgtacaaagaaaaatagtaaaaccgaaacaaggtacacagagaaagaaacattaaccgatgccc 37762108  T
Q  107 aacatagtgaacagactaagccaccaa 133  Q
    |||||||||||| ||||||||||||||    
T  37762109 aacatagtgaacggactaagccaccaa 37762135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 2610628 - 2610726
Alignment:
Q  83 agaaagaaacattaatcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacaca 181  Q
    ||||| ||||||||  | ||| |||||||  ||||| |||||||||||||| ||||||| ||||| ||||||||||  |||||||||||||| ||||||    
T  2610628 agaaaaaaacattagccaatggccaacatgttgaacggactaagccaccaagcatggtagttgaaagagagatttggaattttcgccttcaatcacaca 2610726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 25197642 - 25197565
Alignment:
Q  107 aacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacacaaaa 184  Q
    |||||||||||| ||| || | ||||| ||||||| ||||| |||||||| ||||||||||| ||| |||||| ||||    
T  25197642 aacatagtgaacggaccaaacaaccaaccatggtagttgaaagagagattagtgattttcgctttctaccacaaaaaa 25197565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 2610790 - 2610838
Alignment:
Q  220 ctgttgtttctttccttccatatttcccacaccgtagcatagcaaatca 268  Q
    |||||||||||||||||||| |||| ||||||||| ||||| |||||||    
T  2610790 ctgttgtttctttccttccaaattttccacaccgtcgcataccaaatca 2610838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 52577972 - 52577913
Alignment:
Q  199 caaactttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagca 258  Q
    ||||||||  ||||||| |  ||||| |||||||||||||| ||||||||||||||||||    
T  52577972 caaactttatcattgaaaagcctgttatttctttccttccagatttcccacaccgtagca 52577913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 43001687 - 43001630
Alignment:
Q  209 cattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaat 266  Q
    ||||||||| ||| ||||||||||  ||||| ||||||||||| |||||||| |||||    
T  43001687 cattgaataatctattgtttctttttttccaaatttcccacactgtagcataccaaat 43001630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 53650410 - 53650467
Alignment:
Q  90 aacattaatcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaa 147  Q
    ||||||| || ||||||||||| |||||  |||||||||| ||| |||||||||||||    
T  53650410 aacattagtcaatgtccaacattgtgaatggactaagccatcaagcatggtaattgaa 53650467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 14920689 - 14920852
Alignment:
Q  27 cagagtcataaacatatgtgcaaagaaaaa---cagtaaaaccgaaacaaggtacacagagaaagaaa-cattaatcgatgtccaacatagtgaacagac 122  Q
    |||||||| | |||||||| ||||||||||   |||||||||||||| || ||||||||||||||||| ||||||  |||| |||||||||||||   ||    
T  14920689 cagagtcacagacatatgtacaaagaaaaaaaacagtaaaaccgaaaaaaagtacacagagaaagaaaacattaactgatgcccaacatagtgaatgaac 14920788  T
Q  123 taagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacacaaaaga 186  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  14920789 taagccaccaagcatggtaattgaaggatagatttgcgattttcgccttcaaccacacaaaaga 14920852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 14920887 - 14920975
Alignment:
Q  196 aaacaaactttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaagagcataatgtagtg 284  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  14920887 aaacaaactttgccattgaatatcctgttgtttctttccttccatatttcccacaccgtagcataccaaatcaagagcataatggagtg 14920975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 11305928 - 11305854
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccaca 179  Q
    |||||||| ||||  |||||||||||||||||||||| ||||||| |||||| |  |||||||||||||||||||    
T  11305928 ccaacatattgaatggactaagccaccaaacatggtagttgaaggggagattaggaattttcgccttcaaccaca 11305854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 32097833 - 32097758
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacaca 181  Q
    |||||||| ||||| |||||| |||||||  |||||| ||||| ||||||||||  |||||||||||||||||||||    
T  32097833 ccaacatattgaacggactaa-ccaccaagtatggtagttgaaagagagatttgaaattttcgccttcaaccacaca 32097758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 28043103 - 28043036
Alignment:
Q  99 cgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttc 166  Q
    |||| ||||||||||||||| |||| | | ||||| ||||||| ||||| |||||||||| |||||||    
T  28043103 cgatatccaacatagtgaacggactgaactaccaagcatggtagttgaaagagagatttgcgattttc 28043036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 32097707 - 32097632
Alignment:
Q  203 ctttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaagagcataat 278  Q
    ||||||| || || ||| ||||||||||||||||||| |||| ||||||||| ||| | ||||||||  |||||||    
T  32097707 ctttgccgttaaagattttgttgtttctttccttccaaattttccacaccgtcgcaaaccaaatcaactgcataat 32097632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 250
Target Start/End: Original strand, 7961277 - 7961306
Alignment:
Q  221 tgttgtttctttccttccatatttcccaca 250  Q
    ||||||||||||||||||||||||||||||    
T  7961277 tgttgtttctttccttccatatttcccaca 7961306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 12831505 - 12831549
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaagg 149  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||    
T  12831505 ccaacatagtgaacggactaagccaccaaccatgaaaattgaagg 12831549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 12863480 - 12863524
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaagg 149  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||    
T  12863480 ccaacatagtgaacggactaagccaccaaccatgaaaattgaagg 12863524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 31124241 - 31124181
Alignment:
Q  209 cattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaa 269  Q
    ||||||| || ||||| |||||||| ||||| ||||||||||| |||||| | ||||||||    
T  31124241 cattgaaaatcctgttatttctttctttccagatttcccacacagtagcaaaccaaatcaa 31124181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 129008 - 129175
Alignment:
Q  1 tagtataaggtgtactagaaaagaaccagagtcataaacatatgtgcaaagaaaaacagtaaaaccgaaa----------caaggtacacagagaaagaa 90  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||          ||||| | ||| |||||  |    
T  129008 tagtacaaggtgtaccagaaaagaaacagagtcataaacatatgtgcagagaaaaacagaaaaacagaaaaaccgaaacacaaggaaaacaaagaaaaca 129107  T
Q  91 acattaatcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttg 158  Q
    || |||| | |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  129108 actttaaccaatgtccaacatagtgaacggactaagccaccaagcatggaaattgaaggagagatttg 129175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 129231 - 129333
Alignment:
Q  197 aacaaactttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaagagcataatgtagtgccacatcttaga 296  Q
    ||||||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||| | |||| || ||||||    
T  129231 aacaaactttgccattgaatatcatgttgtctctttctttccatatttcccacaccgtagcataccaaatcaagtgcataatggaatgcctcaccttaga 129330  T
Q  297 aca 299  Q
    |||    
T  129331 aca 129333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 20535317 - 20535406
Alignment:
Q  90 aacattaatcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccaca 179  Q
    |||||||| ||||||||||||||||||||  ||||||||||||| |||| || ||||| ||||||||||  |||||||||||||||||||    
T  20535317 aacattaaccgatgtccaacatagtgaacgtactaagccaccaagcatgatagttgaaagagagatttgcaattttcgccttcaaccaca 20535406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 32610022 - 32609947
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacaca 181  Q
    |||||||| ||||  |||||||||||||||||||||| ||||| ||| |||||| || |||||||||||||||||||    
T  32610022 ccaacatattgaatggactaagccaccaaacatggtagttgaaagagtgatttg-gaatttcgccttcaaccacaca 32609947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 32609882 - 32609825
Alignment:
Q  221 tgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaagagcataat 278  Q
    ||||||||||||||||||| ||||| |||||||| ||||| ||||||||  |||||||    
T  32609882 tgttgtttctttccttccaaatttctcacaccgtcgcataccaaatcaactgcataat 32609825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 33548449 - 33548634
Alignment:
Q  1 tagtataaggtgtactagaaaagaaccagagtcataaacatatgtgcaaagaaaaacagtaaaac-cgaaacaaggtacacagagaaagaaacattaatc 99  Q
    ||||| ||||||||| |  |||||| |||||||| ||||||||||  | |||||||||  ||||  |||||||||  | ||| |||||  ||| |||| |    
T  33548449 tagtacaaggtgtaccatgaaagaaacagagtcacaaacatatgtagagagaaaaacaaaaaaaatcgaaacaagaaaaacaaagaaaacaactttaacc 33548548  T
Q  100 gatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacacaaaaga 186  Q
     ||| ||||||||||||||  |||||| ||||||  |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  33548549 aatg-ccaacatagtgaacgaactaagtcaccaaggatggtaattgaaggagagatttgcaattttcgccttcaaccacacaaaaga 33548634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 33548670 - 33548772
Alignment:
Q  197 aacaaactttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaagagcataatgtagtgccacatcttaga 296  Q
    |||||||||||||||||||||| |||||||||||||| || ||||||| ||||| ||||||||| || || ||| |||||||| | |||| || ||||||    
T  33548670 aacaaactttgccattgaatatcctgttgtttctttcttttcatattttccacatcgtagcataccatattaagtgcataatggaatgccgcaccttaga 33548769  T
Q  297 aca 299  Q
    |||    
T  33548770 aca 33548772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 11324455 - 11324396
Alignment:
Q  199 caaactttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagca 258  Q
    ||||||||| ||||||| |  ||||| |||||||||||||| |||| |||||||||||||    
T  11324455 caaactttgtcattgaagagcctgttatttctttccttccaaattttccacaccgtagca 11324396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 34018123 - 34018177
Alignment:
Q  203 ctttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagc 257  Q
    |||| ||||| || || ||||| |||||||||||||||||||||||||| |||||    
T  34018123 ctttaccattaaaaatcctgttatttctttccttccatatttcccacacagtagc 34018177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 38274051 - 38274160
Alignment:
Q  79 acagagaaagaaa---cattaatcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaac 175  Q
    |||||||||||||   |||||| | ||| |||||||| ||||| |||||||||||||| ||||||| ||||| ||||||||||  |||||||||||||||    
T  38274051 acagagaaagaaaaagcattaaccaatgcccaacatattgaacggactaagccaccaagcatggtagttgaaagagagatttggaattttcgccttcaac 38274150  T
Q  176 cacacaaaag 185  Q
    ||||||||||    
T  38274151 cacacaaaag 38274160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 48610917 - 48610983
Alignment:
Q  203 ctttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaa 269  Q
    ||||| ||||||| |||||| | |||||||| ||||||||||||| ||| |||||||| ||||||||    
T  48610917 ctttgtcattgaaaattctgctatttctttctttccatatttcccccacagtagcataccaaatcaa 48610983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 22583311 - 22583352
Alignment:
Q  209 cattgaatattctgttgtttctttccttccatatttcccaca 250  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  22583311 cattgaatattttgttgtttctttccttccaaatttcccaca 22583352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 29642151 - 29642188
Alignment:
Q  211 ttgaatattctgttgtttctttccttccatatttccca 248  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  29642151 ttgaaaattctgttgtttctttctttccatatttccca 29642188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 3926703 - 3926751
Alignment:
Q  203 ctttgccattgaatattctgttgtttctttccttccatatttcccacac 251  Q
    |||| |||||||| |||||||| |||||||| ||||| |||||||||||    
T  3926703 ctttaccattgaaaattctgttatttctttctttccaaatttcccacac 3926751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 25530020 - 25529972
Alignment:
Q  210 attgaatattctgttgtttctttccttccatatttcccacaccgtagca 258  Q
    |||||||||  ||||||||||||| ||||| ||||||||||| ||||||    
T  25530020 attgaatatcatgttgtttctttctttccaaatttcccacacggtagca 25529972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 34292090 - 34291982
Alignment:
Q  79 acagagaaagaaa---cattaatcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaac 175  Q
    |||||||||||||   |||||| | ||| |||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||    
T  34292090 acagagaaagaaaaagcattaaccaatgcccaacatattgaacggactaagccaccaaacatggtagttgaaagagagatttggaattttcgccttcaac 34291991  T
Q  176 cacacaaaa 184  Q
    ||| |||||    
T  34291990 cacgcaaaa 34291982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 14760251 - 14760328
Alignment:
Q  109 catagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacacaaaaga 186  Q
    |||||||||| |||||||||||||| | || || ||||| |||||||| | |||||||||||||||||||||||||||    
T  14760251 catagtgaacggactaagccaccaagcgtgatagttgaaagagagattagggattttcgccttcaaccacacaaaaga 14760328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 13758219 - 13758296
Alignment:
Q  100 gatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaacca 177  Q
    |||| |||||||||||||| |||||||||| |||||||| || ||||||||||||||    |||||||||||||||||    
T  13758219 gatgcccaacatagtgaacggactaagccatcaaacatgatagttgaaggagagattaactattttcgccttcaacca 13758296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 16237953 - 16237843
Alignment:
Q  79 acagagaaagaaa---cattaatcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaac 175  Q
    |||||||||||||   |||||| | ||| | |||||| ||||| |||||||||||||||||| ||| ||||| |||||||||   ||||||||||| |||    
T  16237953 acagagaaagaaaaagcattaaccaatgcctaacatattgaacggactaagccaccaaacatagtagttgaaagagagatttaaaattttcgccttaaac 16237854  T
Q  176 cacacaaaaga 186  Q
    |||||| ||||    
T  16237853 cacacataaga 16237843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 20017554 - 20017591
Alignment:
Q  220 ctgttgtttctttccttccatatttcccacaccgtagc 257  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  20017554 ctgttatttctttccttccatatttcccacaccgtagc 20017591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 44781773 - 44781828
Alignment:
Q  203 ctttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagca 258  Q
    ||||| ||||||| |||||||| |||||||| ||||| ||||||||||| ||||||    
T  44781773 ctttgtcattgaaaattctgttatttctttctttccaaatttcccacacagtagca 44781828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 14788850 - 14788796
Alignment:
Q  204 tttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagca 258  Q
    |||| ||||||| ||| |||| |||||||||||||| |||||||||||| |||||    
T  14788850 tttgtcattgaaaattttgttatttctttccttccagatttcccacaccctagca 14788796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 34291920 - 34291863
Alignment:
Q  221 tgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaagagcataat 278  Q
    |||| |||||||||||||| ||||||||||||||  |||| ||||||||  |||||||    
T  34291920 tgttatttctttccttccaaatttcccacaccgtcacataccaaatcaactgcataat 34291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 35503909 - 35503856
Alignment:
Q  205 ttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagca 258  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| || ||||||    
T  35503909 ttgccattgaaaatcctgttatttctttctttccatatttcccaaacagtagca 35503856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 365 - 280
Alignment:
Q  92 cattaatcgatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaacca 177  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||| || |||||||||||||| |  |||||||||||||||||    
T  365 cattagtcgatgtccaacatagtgaacggattaagccaccaaacatgatagttgaaggagagattagctattttcgccttcaacca 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 45236 - 45162
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccaca 179  Q
    |||||||| ||||| || ||||||||||||||||||| ||||| |||||||| |  |||||||||||||||||||    
T  45236 ccaacataatgaacggattaagccaccaaacatggtagttgaaagagagattaggaattttcgccttcaaccaca 45162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 45113 - 45048
Alignment:
Q  203 ctttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatca 268  Q
    |||||||||||||||  ||| | |||||||| |||| |||||| |||||||| ||||| |||||||    
T  45113 ctttgccattgaataacctgctatttctttctttccttatttctcacaccgttgcataccaaatca 45048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 291093 - 291019
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccaca 179  Q
    |||||||| ||||| |||||||||||||| ||||||| ||||| |||||||| |  |||||||||||||||||||    
T  291093 ccaacatattgaacggactaagccaccaagcatggtagttgaaagagagattaggaattttcgccttcaaccaca 291019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 16560204 - 16560120
Alignment:
Q  100 gatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacacaaaa 184  Q
    |||| ||| ||| |||||| || |||||||||||||||| || |||||||||||||| || |||||||||||||| |||| ||||    
T  16560204 gatgcccagcatggtgaacggattaagccaccaaacatgatagttgaaggagagattagttattttcgccttcaatcacaaaaaa 16560120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 16605458 - 16605542
Alignment:
Q  100 gatgtccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccacacaaaa 184  Q
    |||| ||| ||| |||||| || |||||||||||||||| || |||||||||||||| || |||||||||||||| |||| ||||    
T  16605458 gatgcccagcatggtgaacggattaagccaccaaacatgatagttgaaggagagattagttattttcgccttcaatcacaaaaaa 16605542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 16560075 - 16560020
Alignment:
Q  203 ctttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagca 258  Q
    |||| ||||||||||  ||||| |||||||| ||||||||||||||||||||||||    
T  16560075 cttttccattgaataacctgttatttctttctttccatatttcccacaccgtagca 16560020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 16605587 - 16605642
Alignment:
Q  203 ctttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagca 258  Q
    |||| ||||||||||  ||||| |||||||| ||||||||||||||||||||||||    
T  16605587 cttttccattgaataacctgttatttctttctttccatatttcccacaccgtagca 16605642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 41216198 - 41216272
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccaca 179  Q
    |||||||||||||| |||||||||||||  ||||||| ||||| |||||||| |  | |||||| ||||||||||    
T  41216198 ccaacatagtgaacggactaagccaccatccatggtagttgaaagagagattaggaagtttcgcgttcaaccaca 41216272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 7694375 - 7694424
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaaggagaga 154  Q
    |||||||||||||  |||||||||||||| ||||||||||||| ||||||    
T  7694375 ccaacatagtgaagggactaagccaccaaccatggtaattgaaagagaga 7694424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 14315513 - 14315572
Alignment:
Q  209 cattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatca 268  Q
    |||||||||| ||||| |||||||||||||| ||||||||| | |||||| | |||||||    
T  14315513 cattgaatatcctgttatttctttccttccaaatttcccacgcagtagcaaaccaaatca 14315572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 37237914 - 37237980
Alignment:
Q  203 ctttgccattgaatattctgttgtttctttccttccatatttcccacaccgtagcatagcaaatcaa 269  Q
    |||| |||||||| || ||||| |||||||| || |||||||||||||| |||||| | ||||||||    
T  37237914 ctttaccattgaagatactgttatttctttctttacatatttcccacacagtagcaaaccaaatcaa 37237980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 42017894 - 42017820
Alignment:
Q  105 ccaacatagtgaacagactaagccaccaaacatggtaattgaaggagagatttgtgattttcgccttcaaccaca 179  Q
    |||||||||||||| |||||||||||||  |||| || ||||| ||||| || |  | |||||||||||||||||    
T  42017894 ccaacatagtgaacggactaagccaccatccatgatagttgaaagagagcttaggaagtttcgccttcaaccaca 42017820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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