View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_high_15 (Length: 279)
Name: NF13805_high_15
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_high_15 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 46764818 - 46764552
Alignment:
| Q |
13 |
gcacagacatactaattgagatggacccctgcaaaatccaaccaaaataactctcatataagccaatcctaagtaaccatcattttcaccataaaataaa |
112 |
Q |
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| T |
46764818 |
gcacagacatactaattgagatggacccctgcaaaatccaaccaaaataactctcatataagccaatcctaagtaaccatcattttcaccgtaaaataaa |
46764719 |
T |
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| Q |
113 |
ttactctaaagaaaaacaaaagttaggattgttatgaatgagttaaaaaattcaccttatttcctagatatcccatcaatcctctgccaacacacgatac |
212 |
Q |
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| T |
46764718 |
ttactctaaagaaaaacagaagttaggattgttatgaatgagttaaaaaattcaccttatttcctagatatcccatcaatcctctgccaacacacgatac |
46764619 |
T |
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| Q |
213 |
tttcatgtttcggacatgatctttcagttcgcctttcacccatatggtaaggtagattcccaccatt |
279 |
Q |
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| T |
46764618 |
tttcatgtttcggacatgatctttcagttcgcctttcacccatacggtaaggtagattcccaccatt |
46764552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 1085146 - 1085026
Alignment:
| Q |
159 |
aaaattcaccttatttcctagatatcccatcaatcctctgccaacacacgatactttcatgtttcggacatgatctttcagttcgcctttcacccatatg |
258 |
Q |
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| T |
1085146 |
aaaattcaccttatttccgagataacccatcaatcctctaccaacacacgatactttcatgtttttaacatgatccttcaattcacctctcacccaaacg |
1085047 |
T |
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| Q |
259 |
gtaaggtagattcccaccatt |
279 |
Q |
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| T |
1085046 |
gtaagaaagattccaaccatt |
1085026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 38122448 - 38122503
Alignment:
| Q |
166 |
accttatttcctagatatcccatcaatcctctgccaacacacgatactttcatgtt |
221 |
Q |
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| T |
38122448 |
accttgtttccaagatatcccatcaatcctcttccaacacaagacactttcatgtt |
38122503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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