View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_high_19 (Length: 227)
Name: NF13805_high_19
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_high_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 7382420 - 7382199
Alignment:
| Q |
6 |
aaaaataaataaattggtctattacgttacaaatgttacaataagttagccattttagtcaaatttctacttcaaatgtatatctaactaacgcacgtgt |
105 |
Q |
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| T |
7382420 |
aaaaataaataaattggtctattacgttacaaatgttacaataacttagccattttggtcaaatttctacttcaaatgtatatctaactaacgcacgtgt |
7382321 |
T |
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| Q |
106 |
ataaaccgaatggtttnnnnnnngttttccaaaatgttaataaaactggatttaggaaagttttcctcaaatttttatttttagtcatgattgaaccatg |
205 |
Q |
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| T |
7382320 |
ataaaccgaat-gttttaaaaaagttttccaaaatgttaataaaactggatttaggaaagttttcctcaaatttttatttttagtcatagttgaaccatg |
7382222 |
T |
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| Q |
206 |
actaaa-tttcagaaaaatccac |
227 |
Q |
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|||||| |||||||||||||||| |
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| T |
7382221 |
actaaattttcagaaaaatccac |
7382199 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 43532009 - 43532053
Alignment:
| Q |
29 |
acgttacaaatgttacaataagttagccattttagtcaaatttct |
73 |
Q |
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| T |
43532009 |
acgttacaaacgttacaataagttagtcattttagtcaaatttct |
43532053 |
T |
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