View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_high_2 (Length: 503)
Name: NF13805_high_2
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 6 - 487
Target Start/End: Original strand, 32405277 - 32405774
Alignment:
| Q |
6 |
agaagcataggtgtaaagaaagcactcacctggcttgatgagttgggattatcgaagataaccattgaactcgattgcaaagaagtaatggatggtatct |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32405277 |
agaagcttaggtgtaaagaaagcactcacctggcttgatgagttgggattatcgaagataaccattgaactcgattgcaaagaagtagtggatggtatct |
32405376 |
T |
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| Q |
106 |
ttgataattctaggaaccaaattgaattgagagtcattttaaatgattttagatcnnnnnnngaatttctctccaaactttataataagttttattcatg |
205 |
Q |
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| T |
32405377 |
ttgataattctaggaaccaaattgaattgagagtcattttaaatgattttagatctttttttgaatttctctccaaactttataataagttttattcatg |
32405476 |
T |
|
| Q |
206 |
gacaaacataccatgtcgc------------------gtcaatgttgcatgttaggcaccatatttttaatttcatcccaacatgtatttctacatttat |
287 |
Q |
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| T |
32405477 |
gacaaacataccatgtcgctcataacttagccagggcgtcaatgttgcatgttaggcaccatatttttaatttcatcccaacatgtatttctacatttat |
32405576 |
T |
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| Q |
288 |
tttgaatgaaatgcattgagtttggttttgttg-aaaaaagaaatgtatagtatgttggattcaatttagattaaatcatcattttcaaccttgacatgc |
386 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32405577 |
tttgaatgaaatgcattgagtttggttttgttgaaaaaaaaaaatgtatagtatgttggatccaatttagattaaatcatcattttcaaccttgacatgc |
32405676 |
T |
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| Q |
387 |
ccacataattgattggatgtaacataacataagatcttattataatgttattattatgatgaattatacatggaaaaggtccatttgttcactctcaaat |
486 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32405677 |
ccacataattgattggatgtaacataacataagatc---ttataatgttattattatgatgaattatacatggaaaaggtccatttgttcactctcaaat |
32405773 |
T |
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