View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_high_21 (Length: 219)
Name: NF13805_high_21
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_high_21 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 40092997 - 40093216
Alignment:
| Q |
1 |
tcttttggtaactggtggtttgttcctcccatcatcaccccacgagtttgatttgtttggaagctgttcttttagccaggccttttagaatagtttcann |
100 |
Q |
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| T |
40092997 |
tcttttggtaactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaggctgttcttttagccaggccttttagaatagtttcatt |
40093096 |
T |
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| Q |
101 |
nnnnnn-ctttctttaattatttctgtgttactgaagtttgaagtgtgaagatatatataacggtttttccatcccagcagatcaatattccatttgaat |
199 |
Q |
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| T |
40093097 |
tttttttctttctttaattatttctgtgttactgaagtttgaagtgtgaagatatatataacggtttttccatcccagcagatcaatattccatttgaat |
40093196 |
T |
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| Q |
200 |
cataggcatcgattggaatt |
219 |
Q |
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| T |
40093197 |
cataggcatcgattagaatt |
40093216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40125469 - 40125540
Alignment:
| Q |
1 |
tcttttggtaactggtggtttgttcctcccatcatcaccccacgagtttgatttgtttggaagctgttcttt |
72 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
40125469 |
tcttttggtaactggtgttttgttcctcccatcatcaccccaagagtttgatttgtttggaagctgctcttt |
40125540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40121817 - 40121888
Alignment:
| Q |
1 |
tcttttggtaactggtggtttgttcctcccatcatcaccccacgagtttgatttgtttggaagctgttcttt |
72 |
Q |
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||||||||||||||||| ||||||||||||||||| | |||| ||||||||| ||||||||||||||||||| |
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| T |
40121817 |
tcttttggtaactggtgttttgttcctcccatcatgaacccaagagtttgatctgtttggaagctgttcttt |
40121888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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