View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13805_high_6 (Length: 425)

Name: NF13805_high_6
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13805_high_6
NF13805_high_6
[»] chr6 (6 HSPs)
chr6 (16-425)||(20505614-20506011)
chr6 (310-425)||(20517638-20517759)
chr6 (340-425)||(20475810-20475895)
chr6 (308-421)||(20493629-20493742)
chr6 (118-154)||(20476090-20476126)
chr6 (340-376)||(24555089-24555125)
[»] chr1 (2 HSPs)
chr1 (323-425)||(13072234-13072336)
chr1 (198-292)||(13072097-13072191)


Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 20506011 - 20505614
Alignment:
Q  16 aatatattattcaacttattacatacttacatagtaaaaacacagaatttattaaaacaagaacttaagttacataatcaagttcactagcaatgtaaaa 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20506011 aatatattattcaacttattacatgcttacatagtaaaaacacagaatttatcaaaacaagaacttaagttacataatcaagttcactagcaatgtaaaa 20505912  T
Q  116 attcaagcaaaagacttaataattccatcttcataagaattaaaggtctcagaaaatacaaaagcagaaacttgttggtccgtcaaaatcaaacgtcctc 215  Q
    |||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  20505911 attcaagcaacagacttaataattccatcttcataagaattaacagtctcagaaaatacaaaagcagaaatttgttggtcagtcaaaatcaaacgtcctc 20505812  T
Q  216 caacttaaccattattataaaacccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataactaagaccatatttttgaatatt 315  Q
    |||||| |||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20505811 caacttcaccat-----------ccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataactaagaccatatttttgaatgtt 20505723  T
Q  316 aaatgttccattcactatttgcataccaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccatttt 415  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  20505722 aaatg-tccattcactatttgcataccaggatagttttctcgaccaccaataccaacacaaaatatattaataacattatcaataaatatcaaccatttt 20505624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 20517759 - 20517638
Alignment:
Q  310 aatattaaatgttccattcactatttgcatacc---aggatagttttctggaccaccaataccaacaaaaaatttatt---aataacattatcaataaat 403  Q
    |||||||||| ||||||||| ||||||  ||||   |||||||||||| ||||||||||||||||||||  |||| ||   | |||||||||||| ||||    
T  20517759 aatattaaattttccattcaatatttgtgtaccttgaggatagttttcaggaccaccaataccaacaaatgatttgttgttattaacattatcaacaaat 20517660  T
Q  404 atcaaccattttgatgattcaa 425  Q
    ||||||||||||||||||||||    
T  20517659 atcaaccattttgatgattcaa 20517638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 20475895 - 20475810
Alignment:
Q  340 accaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccattttgatgattcaa 425  Q
    ||||||||| ||||| |||||||||||||||||| ||  ||| | ||||||| |||||| ||||||||||||||||||||||||||    
T  20475895 accaggataattttcaggaccaccaataccaacacaagctttttgaataacactatcaacaaatatcaaccattttgatgattcaa 20475810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 308 - 421
Target Start/End: Complemental strand, 20493742 - 20493629
Alignment:
Q  308 tgaatattaaatgttccattcactatttgcataccaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatca 407  Q
    |||||||||||| |||| |||| | |||||| ||||||||| ||||| |||||||||||||||| | ||  |||   |||||||||||||| |||||| |    
T  20493742 tgaatattaaattttcccttcaatgtttgcacaccaggataattttcaggaccaccaataccaatacaagcttttccaataacattatcaacaaatatta 20493643  T
Q  408 accattttgatgat 421  Q
    ||||||||| ||||    
T  20493642 accattttgttgat 20493629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 20476126 - 20476090
Alignment:
Q  118 tcaagcaaaagacttaataattccatcttcataagaa 154  Q
    |||||||| |||||||||||||||| |||||||||||    
T  20476126 tcaagcaacagacttaataattccagcttcataagaa 20476090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 24555125 - 24555089
Alignment:
Q  340 accaggatagttttctggaccaccaataccaacaaaa 376  Q
    ||||||||||||| | |||||||||||||||||||||    
T  24555125 accaggatagtttgcaggaccaccaataccaacaaaa 24555089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 323 - 425
Target Start/End: Original strand, 13072234 - 13072336
Alignment:
Q  323 ccattcactatttgcataccaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccattttgatgatt 422  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||||| |||||||||||||||||| ||||    
T  13072234 ccattcaatatttgcataccaggatagttttctggaccaccaataccaacacaagatttttgaataacattatcaacaaatatcaaccattttgaagatt 13072333  T
Q  423 caa 425  Q
    |||    
T  13072334 caa 13072336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 13072097 - 13072191
Alignment:
Q  198 tcaaaatcaaacgtcctccaacttaaccattattataaaacccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataa 292  Q
    |||||||||| |||||||| |  | |||| | |||||| |||||||||  ||||||  | ||| |||||||| ||||||||| ||||||||||||    
T  13072097 tcaaaatcaatcgtcctcccatctcaccaatcttataatacccaatatccgaacaattagtagtagatccattaacacaaaacacaaacttataa 13072191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University