View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_low_1 (Length: 576)
Name: NF13805_low_1
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 46 - 497
Target Start/End: Complemental strand, 31733997 - 31733544
Alignment:
| Q |
46 |
cttgtattatgggacggagggggtatgttcaaaagagttaaaataattatgtaagtgtgtgggnnnnnnntgaaaaggcacgaaagaagtgtttcactgc |
145 |
Q |
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| T |
31733997 |
cttgtatgatgggacggagttggtatgttcaaaagagttaccataattatgtaagtgtgtgggaaaaaaatgaaaacgcacgaaagaagtgtttcagtgc |
31733898 |
T |
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| Q |
146 |
ttttcttagaagttagaactcagagctagaagcttcgagttggacattaattttgattttcagaagnnnnnnngtttcaccattaa--gagtttcttcca |
243 |
Q |
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| T |
31733897 |
ttttcttagaagttagaactcagagctagaagcttcgagttggacattaattttgattttcagaagtttttttgtttcaccattaaaagagtttcttcca |
31733798 |
T |
|
| Q |
244 |
tcatcataacatcctttagatatcatcatggatgtattctctttctgtcattcgtcgtaggtttcactgacatacattggttttaatgtcatcattacaa |
343 |
Q |
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| T |
31733797 |
tcatcataacatcctttagatatcatcatggatgtattctctttctgtcattcgtcgtaggtttcactgacatacattggttttaatgtcatcattacaa |
31733698 |
T |
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| Q |
344 |
gataacaaaaatgacaccaacaaccacgtattgtttgtcatgtgtatgaatcaggcaacactataatttgtattaagcttaaagctgaactggttaccgc |
443 |
Q |
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| T |
31733697 |
gataacaaaaatgacaccaacatccacatattgtttgtcatgtgtatgaatcaggcaacactataatttgtattaagcttaaagctgaactggttaccgc |
31733598 |
T |
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| Q |
444 |
aaaatctctcttgatgatttgatttgatgcacaactttttattgatctccatct |
497 |
Q |
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| T |
31733597 |
aaaatctctcttgatgatttgatttgatgcacaactttttattgatctccatct |
31733544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 220 - 497
Target Start/End: Original strand, 32848356 - 32848631
Alignment:
| Q |
220 |
tttcaccattaagagtttcttccatcatcataacatcctttagatatcatcatggatgtattctctttctgtcattcgtcgtaggtttcactgacataca |
319 |
Q |
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| T |
32848356 |
tttcaccattaagagttccttccatcatcagaacatcctttagatatcatcatggatgttttctctctccttcattcgt---atatttcaccgacatgca |
32848452 |
T |
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| Q |
320 |
ttggttttaatgtcatcattacaagataacaaaaatgacaccaacaaccacgtattgtttgtcatgtgtatgaatcaggcaacactataatt-------- |
411 |
Q |
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| T |
32848453 |
ttggttttaatgtcatcattacaagataacaaaaatgacaccaacaaccataaaatgtttatcatgtgtatgaatcagacaacactataattcattatca |
32848552 |
T |
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| Q |
412 |
tgtattaagcttaaagctgaactggttaccgcaaaatctctcttgatgatttgatttgatgcacaactttttattgatctccatct |
497 |
Q |
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| T |
32848553 |
tggattaagcttaaagctggactgttaaccacaaaatctctc--ga-----tgatttgatgtacaactttttattgatctccatct |
32848631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 32848078 - 32848169
Alignment:
| Q |
68 |
gtatgttcaaaagagttaaaataattatgtaagtgtgtgggnnnnnnntgaaaaggcacgaaagaagtgtttcactgcttttcttagaagtt |
159 |
Q |
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| T |
32848078 |
gtatgctcaaaagaattacaacgatcatgtaagtgtgtgggacaaaaatgaaaagccacgaaagagttgtttcactgcttttcttagaagtt |
32848169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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