View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_low_11 (Length: 378)
Name: NF13805_low_11
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 48463694 - 48463843
Alignment:
| Q |
67 |
tatgggaggaattttgagtttgacttgaaccttggtgataaaatatgacttccatattaaatattagatgttaatttaggttgtctcttagtcttatgaa |
166 |
Q |
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| T |
48463694 |
tatgggaggaattttgagtttgacttgaaccttggtgataaaatatgacttccatattaaatattagatgttaatttaggttgtctcttagtcttatgaa |
48463793 |
T |
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| Q |
167 |
ttagttgttactttaggccgtccctccttacattaaaaaaggtggaacac |
216 |
Q |
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| T |
48463794 |
ttagttgttactttaggccgtccctccttacattaaaaaaggtggaacac |
48463843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 243 - 368
Target Start/End: Original strand, 48463846 - 48463971
Alignment:
| Q |
243 |
tattgcaagttgtacagaccagcaaacaagtttactaattctactgccagtggattcattaataaatcattttaaggaattctgataacaatggnnnnnn |
342 |
Q |
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| T |
48463846 |
tattgcaagttgtacagaccagcaaacaagtttactaattctactgctagtggattcattaataaatcattttaaggaattctgataacaatggtttttt |
48463945 |
T |
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| Q |
343 |
nnaataagttagagattcaagaataa |
368 |
Q |
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| T |
48463946 |
ttaataagttagagattcaagaataa |
48463971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 48457425 - 48457519
Alignment:
| Q |
160 |
ttatgaattagttgttactttaggccgtccctccttacattaaaaaaggtggaacacatttgtttaaaattagcctttctaaatattgcaagttgtaca |
258 |
Q |
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| T |
48457425 |
ttataaattagttagtactttaggacgtccttccttacattcaagaaggtggaactaattt----aaaattagcttttctaaatattgcaagtcgtaca |
48457519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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