View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_low_13 (Length: 342)
Name: NF13805_low_13
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 42751956 - 42751629
Alignment:
| Q |
1 |
gacttcctagctatgtttggagcttctcccagtatagacctcttaattcatctcttatgattggcctcttggacctactctctccatactctatgagaac |
100 |
Q |
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| T |
42751956 |
gacttcctagctatgtttggagcttctcccagcatagatctcttagttcatctcttatgattggcctcttggacctactctctccatactctatgagaac |
42751857 |
T |
|
| Q |
101 |
ttggttatgtagagcttaatttgcnnnnnnnnn-cctctccttttctggctttgtaattttagtcttttaaccnnnnnnntcaataaattgtaaagctac |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42751856 |
ttggttatgtagagcttaatttgcttttttttttcctctccttttctggctttgtaattttagtcttttaaccaaaaaaatcaataaattgtaaagctag |
42751757 |
T |
|
| Q |
200 |
atctatataatttctaatcaaaaattgcaacatgaacaattgaaaattctaattaaattaagtatcttctctttcatcatccataaaattatgactatta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42751756 |
atctatataatttctaatcaaaaattgcaacatgaacaattgaaaattctaattaaattaagtatcttctctttcatcatccataaaattatgactatta |
42751657 |
T |
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| Q |
300 |
aatatgattcatcaaaagacaacaatat |
327 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42751656 |
aatatgattcatcaaaagacaacaatat |
42751629 |
T |
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