View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13805_low_14 (Length: 340)

Name: NF13805_low_14
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13805_low_14
NF13805_low_14
[»] chr3 (2 HSPs)
chr3 (18-334)||(38718674-38718990)
chr3 (257-334)||(3421575-3421652)
[»] chr1 (3 HSPs)
chr1 (259-334)||(13879577-13879652)
chr1 (255-325)||(30143109-30143179)
chr1 (255-318)||(30157757-30157820)
[»] chr7 (3 HSPs)
chr7 (255-325)||(11320035-11320104)
chr7 (290-325)||(10271021-10271056)
chr7 (291-334)||(39678287-39678330)
[»] chr8 (1 HSPs)
chr8 (255-334)||(24411019-24411098)
[»] chr4 (3 HSPs)
chr4 (259-322)||(10728185-10728248)
chr4 (259-322)||(10941954-10942017)
chr4 (255-322)||(38002721-38002788)
[»] chr5 (1 HSPs)
chr5 (255-325)||(42774102-42774172)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 38718990 - 38718674
Alignment:
Q  18 aggtcttgaatatgattacatttagttgaggggacttgtgtaaatgatacccaaaatagcggacataccctagtaattataatggtcttaccttgatgag 117  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38718990 aggtcttaaatatgattacatttagttgagaggacttgtgtaaatgatacccaaaatagcggacataccctagtaattataatggtcttaccttgatgag 38718891  T
Q  118 tacatcaacaacctcagtgaatcctctgcaacaagcagagacaagggcatgtattgcaacatgaggacggatcatgttggattgcatcagtagttcagca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38718890 tacatcaacaacctcagtgaatcctctgcaacaagcagagacaagggcatgtattgcaacatgaggacggatcatgttggattgcatcagtagttcagca 38718791  T
Q  218 aatcttgcatgtcccacatagcttgcttcaagtaaagcctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38718790 aatcttgcatgtcccacatagcttgcttcaagtaaagcctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggc 38718691  T
Q  318 cttccctctgtgctgct 334  Q
    ||||||||  |||||||    
T  38718690 cttccctcactgctgct 38718674  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 334
Target Start/End: Complemental strand, 3421652 - 3421575
Alignment:
Q  257 tcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctctgtgctgct 334  Q
    |||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||  |||||||    
T  3421652 tcttcagatgcaagttgtgatgttccaccattgataaggacctccaatattttcaaatgaccttccctcactgctgct 3421575  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 13879577 - 13879652
Alignment:
Q  259 ttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctctgtgctgct 334  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  13879577 ttcacatgcaagttgtgacgccccaccattgataaggatctccaatattttcaaatggccttccctcactgctgct 13879652  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 30143179 - 30143109
Alignment:
Q  255 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 325  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||    
T  30143179 cctcttcgcatgcaagttgtgacgctccaccattgataatgacctccaatattttcaaatggcctaccctc 30143109  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 30157820 - 30157757
Alignment:
Q  255 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggcc 318  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||    
T  30157820 cctcttcacatgcaagttgtgacgctccaccattgataataacctccaatattttcaaatggcc 30157757  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 11320104 - 11320035
Alignment:
Q  255 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 325  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  11320104 cctcttcacatgcaagttgtga-gtcccaccattgataaggacctccaatattttcaaatggccttccctc 11320035  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 325
Target Start/End: Complemental strand, 10271056 - 10271021
Alignment:
Q  290 ataaggacctccaatattttcaaatggccttccctc 325  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10271056 ataaggacctctaatattttcaaatggccttccctc 10271021  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 39678287 - 39678330
Alignment:
Q  291 taaggacctccaatattttcaaatggccttccctctgtgctgct 334  Q
    ||||||| |||||||||||||||||||||||||||  |||||||    
T  39678287 taaggacttccaatattttcaaatggccttccctcactgctgct 39678330  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 334
Target Start/End: Original strand, 24411019 - 24411098
Alignment:
Q  255 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctctgtgctgct 334  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  24411019 cctcttcacatgcaatttgtgactcctcaccattgataaggacctccaatattttcaattggccttccctcgttgctgct 24411098  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 10728185 - 10728248
Alignment:
Q  259 ttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttcc 322  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10728185 ttcacatgtaagttgtgacgccccaccattgataaggacctccaatattttcaaatggtcttcc 10728248  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 10941954 - 10942017
Alignment:
Q  259 ttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttcc 322  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10941954 ttcacatgtaagttgtgacgccccaccattgataaggacctccaatattttcaaatggtcttcc 10942017  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 38002721 - 38002788
Alignment:
Q  255 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttcc 322  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||    
T  38002721 cctcttcacatgcaagttgtgacaccccaccattgataaggacctccaatattttaaaatggtcttcc 38002788  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 42774172 - 42774102
Alignment:
Q  255 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 325  Q
    ||||||||||||||||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||    
T  42774172 cctcttcacatgcaagttgtgacactccactattgataaagacctgcaatattttcaaatggccttccctc 42774102  T

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