View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13805_low_15 (Length: 335)
Name: NF13805_low_15
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_low_15 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr4 (12 HSPs) |
| |
|
| [»] chr6 (18 HSPs) |
| |
|
| [»] scaffold0807 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 19468214 - 19468548
Alignment:
| Q |
1 |
tcacttagtgagatcaaaatggaatctattgggggtaagaatgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||| | ||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
19468214 |
tcacttagtgagatcaaaatggaaaatattgggagtaagagtgtagagaattctgattctttgccggattttggtgtattccctcaattaaagtatctct |
19468313 |
T |
|
| Q |
101 |
atttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacat |
200 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||| |||||| ||| ||||||||||||| || |||||||||||||||||||||| ||| | |||| |
|
|
| T |
19468314 |
acttggctgagaattcatggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacat |
19468413 |
T |
|
| Q |
201 |
atcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttaga |
300 |
Q |
| |
|
|||| |||| || | |||||||||| || |||| ||| |||||| |||| ||| ||||| ||||||||| |||||| ||| ||||| |||||||| | |
|
|
| T |
19468414 |
atcggaaggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgta |
19468513 |
T |
|
| Q |
301 |
gtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
|| ||| |||| ||||||||||| |||||| |||| |
|
|
| T |
19468514 |
gttcccaagctggaggtgttgaagttgtcagatac |
19468548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 43635033 - 43634957
Alignment:
| Q |
257 |
tagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43635033 |
tagcctactgttcaatagtgaac--acttggaatgacctttagagtcccccagctagaggcgttgaacttgtcatatac |
43634957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 335
Target Start/End: Complemental strand, 9586942 - 9586689
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
|||||||| |||||||| |||||| | |||| |||||||| ||| ||| |||||| ||| ||||||| |||||||| |||||||||||||||||| |
|
|
| T |
9586942 |
cctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatc |
9586843 |
T |
|
| Q |
182 |
tgagaagttgccaaaacatatcgaa---aggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaa |
278 |
Q |
| |
|
|| | |||| |||||||| || |||| || | ||||||||| |||| |||||| ||||||| |||||||| || | ||||| | || || |
|
|
| T |
9586842 |
tgtgccattgctgtaacatatctaaaagaggtatttgtcaagttttacaaagatgttgtcagattagacatttgaacata---tcttgttctcctgtaaa |
9586746 |
T |
|
| Q |
279 |
cctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
|||| ||| ||| || ||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9586745 |
cctacttgaaattaattttgaagtccccaagctagaggtgttgaacttgtcatatac |
9586689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 9581374 - 9581276
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgat |
180 |
Q |
| |
|
||||||||||||||||| |||||| | ||||| ||| |||| ||| ||| |||||| ||| ||||||| |||||||| |||||||||||||||||| |
|
|
| T |
9581374 |
cctcaattaaagtctcttgatttgggtcacaatcaatgtttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat |
9581276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 331
Target Start/End: Original strand, 51764196 - 51764485
Alignment:
| Q |
42 |
tgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcatt |
141 |
Q |
| |
|
|||||| ||||||||||||| | |||| ||||||||| | ||||||||||||||||||||| ||| ||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
51764196 |
tgtagagaattctgattctttggtggactttggtgtataccctcaattaaagtctctctatctgggtgaaaatacatggttaagtgatgaaagcatcata |
51764295 |
T |
|
| Q |
142 |
atgattgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaaga |
241 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||| | |||| | |||||| |||||||| | ||||||||| || |||| ||||| |
|
|
| T |
51764296 |
atgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaaggtgtctgtgaagttttaaggagatgttctaaga |
51764395 |
T |
|
| Q |
242 |
ttaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcat |
331 |
Q |
| |
|
||||| ||||||||||| || | ||||||| |||||| ||| |||||||||||||| ||| || |||| |||||||| ||||||||| |
|
|
| T |
51764396 |
ttaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggtgttagacttgtcat |
51764485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 71 - 335
Target Start/End: Original strand, 13470517 - 13470781
Alignment:
| Q |
71 |
ttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgca |
170 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| | ||| |||||||| ||||||| ||||||| ||| ||||||||| |||||| |||||||| |
|
|
| T |
13470517 |
ttggtgtataccctcaattaaagtctctctatttgggaaaaaatcaatggttaagtgatgaaggcatcataatgtttgcttccaatttccccaatttgca |
13470616 |
T |
|
| Q |
171 |
gctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttca |
270 |
Q |
| |
|
|||||||||||||| ||||| | | |||| |||||| || | |||||||||| | ||||||||||||||| |||||||| ||||||| ||| | |
|
|
| T |
13470617 |
gctgcttgatttgaattgttgcaatctcttatcaaaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaa |
13470716 |
T |
|
| Q |
271 |
acagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
| |||||| ||| |||||||||||||| || ||| | || |||||||||||||||||| |||| |
|
|
| T |
13470717 |
aaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaatac |
13470781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 297
Target Start/End: Original strand, 51113537 - 51113792
Alignment:
| Q |
42 |
tgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcatt |
141 |
Q |
| |
|
|||||| |||||| |||||| ||||| |||| |||| || ||||||||||||||| | |||| | ||||| ||||||||| ||||| |||||||| |
|
|
| T |
51113537 |
tgtagagaattctaattctttgatgggttttgttgtaagaccgcaattaaagtctctccagttggatcacaatccatggttaagagatgagagcatcata |
51113636 |
T |
|
| Q |
142 |
atgattgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaaga |
241 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||||| | |||| | | ||||| ||||| || | ||||||||||| || |||||||| | |
|
|
| T |
51113637 |
atgattgcttccattttccccaatctgcagcttcttgatttaactcattgctatgagatatccgaaggtatttgtcaagttttaaagagatgttgtaaaa |
51113736 |
T |
|
| Q |
242 |
ttaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaacttt |
297 |
Q |
| |
|
||||| ||||||| |||| |||||||||| | |||| ||| |||||||||||||| |
|
|
| T |
51113737 |
ttaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaacttt |
51113792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 514521 - 514624
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| |||| ||||||| | | || ||| ||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
514521 |
cctcaattaaaatctctctatttggctcacaattcatgcttaagagatgaaaaccttataatgtttgcttcaattttcccgaatttgcagctaattgatt |
514620 |
T |
|
| Q |
182 |
tgag |
185 |
Q |
| |
|
|||| |
|
|
| T |
514621 |
tgag |
514624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 55505068 - 55505157
Alignment:
| Q |
246 |
gaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
55505068 |
gaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccaactagaggtgttgaacttgtcatatac |
55505157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 21834096 - 21834276
Alignment:
| Q |
4 |
cttagtgagatcaaaatggaatctattgggggtaagaatgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctctatt |
103 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| | || |||||||| |||| | |||| |||||||| | ||||||||||||||||||| || |
|
|
| T |
21834096 |
cttagtgagatcaaaatggaacatattgggagtaagagtcgagggaattctgaatctttggtggattttggtgtgtaccctcaattaaagtctctctttt |
21834195 |
T |
|
| Q |
104 |
tggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatttga |
184 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||| ||| ||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
21834196 |
tgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacagctgcttgatttga |
21834276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 199 - 331
Target Start/End: Original strand, 53761685 - 53761817
Alignment:
| Q |
199 |
atatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaacttta |
298 |
Q |
| |
|
||||| |||||| || | |||||||||| || |||||||| |||||| |||||||| ||||| | ||||||| |||||| |||||||||||||||||| |
|
|
| T |
53761685 |
atatctaaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttg |
53761784 |
T |
|
| Q |
299 |
gagtcccccagctagaggtgttgaacttgtcat |
331 |
Q |
| |
|
||| ||| ||||||||| |||||||||||||| |
|
|
| T |
53761785 |
tagttcccaagctagaggcgttgaacttgtcat |
53761817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 532307 - 532239
Alignment:
| Q |
267 |
ttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
||||| |||||| ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
532307 |
ttcaagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatac |
532239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 547219 - 547119
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
|||||||| ||||||||| |||||||| | |||||||| ||| ||||||||||||| ||| || ||||||| ||||| |||||||| |||||||||| |
|
|
| T |
547219 |
cctcaattgaagtctctccatttggctaaaaattcatgcataagagatgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgatt |
547120 |
T |
|
| Q |
182 |
t |
182 |
Q |
| |
|
| |
|
|
| T |
547119 |
t |
547119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 371226 - 371135
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagct |
173 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||| |||||| | | || ||| ||||||| ||||||| ||||||||||| |
|
|
| T |
371226 |
cctcaattaaaatctctctatttggctcacaattcatggttaagagatgaataccttataatgtttgcttcaattttcctgaatttgcagct |
371135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 570840 - 570737
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgat---tgcttccattttccctaatttgcagctgcttg |
178 |
Q |
| |
|
|||||||| |||||||| | |||||| ||||| ||||||||| |||||||| ||| ||||| || ||||||||||||||| |||||||| || |||| |
|
|
| T |
570840 |
cctcaattgaagtctctatccttggctcacaatacatggttaagtgatgaaaacattattataatgtttgcttccattttccccaatttgcaactacttg |
570741 |
T |
|
| Q |
179 |
attt |
182 |
Q |
| |
|
|||| |
|
|
| T |
570740 |
attt |
570737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 335
Target Start/End: Original strand, 55908567 - 55908777
Alignment:
| Q |
128 |
atgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatc-gaa--aggtgttggccaagtttt |
224 |
Q |
| |
|
|||||| |||||| || |||||||||||||||| |||||||| | ||||||||||| ||||| |||||||| ||| |||| || | ||||| | |
|
|
| T |
55908567 |
atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttct |
55908666 |
T |
|
| Q |
225 |
aaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaac |
324 |
Q |
| |
|
|| || ||||||||| |||| ||||||| ||||||||||||||| |||||| ||| || |||| ||||||| ||| || | |||||||||| ||| |
|
|
| T |
55908667 |
aaggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaac |
55908766 |
T |
|
| Q |
325 |
ttgtcatatac |
335 |
Q |
| |
|
|||||| |||| |
|
|
| T |
55908767 |
ttgtcacatac |
55908777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 1548219 - 1548321
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
|||||||||||||| |||| |||| || |||||||| | |||| ||||||| ||||| || || |||| |||||||| |||||||| |||||||||| |
|
|
| T |
1548219 |
cctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatt |
1548318 |
T |
|
| Q |
182 |
tga |
184 |
Q |
| |
|
||| |
|
|
| T |
1548319 |
tga |
1548321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 12121251 - 12121353
Alignment:
| Q |
83 |
ctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgattt |
182 |
Q |
| |
|
||||||||||||||||| ||||| | | | |||||||| | ||||||||||||| | |||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
12121251 |
ctcaattaaagtctctccatttgatttcgagtacatggttacaagatgaaagcatcaaaaggattgcttccgttttccccaatttgcaattgcttgattt |
12121350 |
T |
|
| Q |
183 |
gag |
185 |
Q |
| |
|
||| |
|
|
| T |
12121351 |
gag |
12121353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 53761494 - 53761582
Alignment:
| Q |
1 |
tcacttagtgagatcaaaatggaatctattgggggtaagaatgtagataattctgattcttcgatggaatttggtgtacagcctcaatt |
89 |
Q |
| |
|
|||||||||||||||||||||||| || ||| | ||| |||||| |||||||| ||||||||||| |||||||| | |||||||| |
|
|
| T |
53761494 |
tcacttagtgagatcaaaatggaaagaatagggaatgagattgtagagaattctgaatcttcgatggagcttggtgtataccctcaatt |
53761582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 1600671 - 1600615
Alignment:
| Q |
136 |
atcattatgattgcttccattttccctaatttgcagctgcttgatttgagaagttgc |
192 |
Q |
| |
|
||||| ||| ||||||||| ||| || |||||||| |||||||||||||| |||||| |
|
|
| T |
1600671 |
atcataatgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgc |
1600615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 10169845 - 10170140
Alignment:
| Q |
1 |
tcacttagtgagatcaaaatggaatctattgggggtaagaatgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||||| | |||| ||||||||||||| | ||| ||||||||| | |||||||| |||||||||| |
|
|
| T |
10169845 |
tcacttagtgagatcaaaatggaaaatatagggagtaagagtttagacaattctgattctttgccggattttggtgtataccctcaattgaagtctctct |
10169944 |
T |
|
| Q |
101 |
atttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacat |
200 |
Q |
| |
|
|||||||| ||||| ||||| ||| |||||| |||||| ||| || |||||||||| ||||||||| ||||| ||||||||| |||| | |||| |
|
|
| T |
10169945 |
atttggcttacaatacatgggtaagggatgaacacatcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacat |
10170044 |
T |
|
| Q |
201 |
atcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactt |
296 |
Q |
| |
|
|||| |||| || | |||||||||| || |||| ||| |||||| |||| || ||||| ||||||||| |||||| ||| ||| | ||||||| |
|
|
| T |
10170045 |
atcggaaggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaatttagcccactgttcaagagtgaatctacttgaagtgaactt |
10170140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 10177370 - 10177665
Alignment:
| Q |
1 |
tcacttagtgagatcaaaatggaatctattgggggtaagaatgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||||| | |||| ||||||||||||| | ||| ||||||||| | |||||||| |||||||||| |
|
|
| T |
10177370 |
tcacttagtgagatcaaaatggaaaatatagggagtaagagtttagacaattctgattctttgccggattttggtgtataccctcaattgaagtctctct |
10177469 |
T |
|
| Q |
101 |
atttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacat |
200 |
Q |
| |
|
|||||||| ||||| ||||| ||| |||||| |||||| ||| || |||||||||| ||||||||| ||||| ||||||||| |||| | |||| |
|
|
| T |
10177470 |
atttggcttacaatacatgggtaagggatgaacacatcataatgttttcttccatttttcctaatttgaagctgtttgatttgaactcttgcaatcacat |
10177569 |
T |
|
| Q |
201 |
atcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactt |
296 |
Q |
| |
|
|||| |||| || | |||||||||| || |||| ||| |||||| |||| || ||||| ||||||||| |||||| ||| ||| | ||||||| |
|
|
| T |
10177570 |
atcggaaggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaatttagcccactgttcaagagtgaatctacttgaagtgaactt |
10177665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 10167389 - 10167508
Alignment:
| Q |
1 |
tcacttagtgagatcaaaatggaatctattgggggtaagaatgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||||| | |||| ||||||||||||| | ||| ||||||||| | |||||||| |||||||||| |
|
|
| T |
10167389 |
tcacttagtgagatcaaaatggaaaatatagggagtaagagtttagacaattctgattctttgccggattttggtgtataccctcaattgaagtctctct |
10167488 |
T |
|
| Q |
101 |
atttggctgacaattcatgg |
120 |
Q |
| |
|
|||||||| ||||| ||||| |
|
|
| T |
10167489 |
atttggcttacaatacatgg |
10167508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 42 - 335
Target Start/End: Complemental strand, 10614936 - 10614643
Alignment:
| Q |
42 |
tgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcatt |
141 |
Q |
| |
|
|||||| ||||||||||| | | ||| ||||||||| | ||||||||||||||||||||||||| | ||| ||||||| |||||| |||| || |
|
|
| T |
10614936 |
tgtagagaattctgattcattggcggagtttggtgtataccctcaattaaagtctctctatttgggaaaaaatcagtggttaagcgatgaaggcattata |
10614837 |
T |
|
| Q |
142 |
atgattgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaaga |
241 |
Q |
| |
|
| | ||||||||| |||||| |||||||| ||||||||||||| ||||| | | ||| ||||| || | |||||||||| | |||||||||| |
|
|
| T |
10614836 |
aagtttgcttccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttatatgaaggtatttgtcaagttttaaggatatgttgtaaga |
10614737 |
T |
|
| Q |
242 |
ttaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
||||| |||||||| ||||||| ||| || |||||| ||| ||||||||||| || || ||| | || |||||||||||||||||| |||| |
|
|
| T |
10614736 |
ttaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtcaaatac |
10614643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 15091935 - 15092048
Alignment:
| Q |
70 |
tttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgc |
169 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| |||||| |||||| |||||||| ||||| || |||||||||||||||| || || |
|
|
| T |
15091935 |
tttggtgtataccctcaattaaagtctctctatttggctcacaattaccggttaagtgatgaaatcatcagaatacttgcttccattttccccaacttag |
15092034 |
T |
|
| Q |
170 |
agctgcttgatttg |
183 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
15092035 |
agctacttgatttg |
15092048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 335
Target Start/End: Original strand, 6589108 - 6589372
Alignment:
| Q |
71 |
ttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgca |
170 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| | | ||||||||||||| ||||| || ||||| ||| |||||||||||||||| ||||| | |
|
|
| T |
6589108 |
ttggtgttcatcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttaga |
6589207 |
T |
|
| Q |
171 |
gctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttca |
270 |
Q |
| |
|
| |||||||||| | ||| | |||||||| |||||| || | ||||| || | ||| ||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
6589208 |
ggtgcttgatttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaag |
6589307 |
T |
|
| Q |
271 |
acagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
| |||||| ||| |||||||||||||| ||| ||| ||| |||||||||||||||||| |||| |
|
|
| T |
6589308 |
aaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatac |
6589372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 335
Target Start/End: Complemental strand, 6395177 - 6394914
Alignment:
| Q |
72 |
tggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcag |
171 |
Q |
| |
|
||||||| | ||||| ||||| ||||||||||||| | |||| ||||||| ||||||| ||||| ||| || ||||||||||||| ||||| ||| |
|
|
| T |
6395177 |
tggtgtataccctcagttaaactctctctatttgggtacaaattactggttaatagatgaaataatcataatgtttacttccattttccccaatttacag |
6395078 |
T |
|
| Q |
172 |
ctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaa |
271 |
Q |
| |
|
|| |||||||||| | ||||| | | ||||| ||||| || | ||||||||||| | ||||||||| ||| |||||||| |||| | |||||||| |
|
|
| T |
6395077 |
ctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaa |
6394978 |
T |
|
| Q |
272 |
cagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
|||||| ||| ||||||||||||| ||| ||| |||| |||||||||||||||||| |||| |
|
|
| T |
6394977 |
aagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatac |
6394914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 335
Target Start/End: Complemental strand, 6410321 - 6410056
Alignment:
| Q |
70 |
tttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgc |
169 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| | ||||| ||| ||||| |||||||| |||||| || ||||||||||||| || ||||| | |
|
|
| T |
6410321 |
tttggtgtataccctcaattaaagtctctctatttggattacaatacatcgttaagtgatgaaataatcattttgtttgcttccatttttcccaatttac |
6410222 |
T |
|
| Q |
170 |
agctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttc |
269 |
Q |
| |
|
| || |||||||||| ||||||| | ||||| ||||| || | ||||||||| | | ||||||||| ||| | ||||| || ||||||| || |
|
|
| T |
6410221 |
aactacttgatttgacgggttgccagcaaatatctgaaggtatttgtcaagttttacagaaatgttgtaagcttaagcatttggacttagcctattgcaa |
6410122 |
T |
|
| Q |
270 |
aacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
|| |||||| ||| ||||||||||||| ||| ||| |||| |||||||||||| |||| |||| |
|
|
| T |
6410121 |
aaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatac |
6410056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 6423520 - 6423418
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||| ||||||| |||||||| |||||| ||| |||||||||||||||||||||| | || ||||||| |
|
|
| T |
6423520 |
cctcaattaaagtctctctatttgggttacacttcgtggttaagtgatgaaatcatcataatgtttgcttccattttccctaatttaaaactacttgatt |
6423421 |
T |
|
| Q |
182 |
tga |
184 |
Q |
| |
|
||| |
|
|
| T |
6423420 |
tga |
6423418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 14821003 - 14820893
Alignment:
| Q |
72 |
tggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcag |
171 |
Q |
| |
|
||||||| | |||||||| |||||||||||||||| | |||||||||||||||||||||||| |||||| || ||||||||||||||| ||||| || |
|
|
| T |
14821003 |
tggtgtataccctcaattgaagtctctctatttgggtcacaattcatggttaaatgatgaaataatcattttgtatgcttccattttcccaaatttaaag |
14820904 |
T |
|
| Q |
172 |
ctgcttgattt |
182 |
Q |
| |
|
|| |||||||| |
|
|
| T |
14820903 |
ctacttgattt |
14820893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 148 - 335
Target Start/End: Complemental strand, 7119394 - 7119207
Alignment:
| Q |
148 |
gcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattagga |
247 |
Q |
| |
|
|||||| ||||||| ||||| || || |||||||||| | |||| | |||||||| ||||| || | |||||||||| || |||| |||||||| |
|
|
| T |
7119394 |
gcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaac |
7119295 |
T |
|
| Q |
248 |
atttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||| ||| |||||||||||||| || | |||||| |||||||||||||||||| |||| |
|
|
| T |
7119294 |
atttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatac |
7119207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 148 - 335
Target Start/End: Complemental strand, 7131872 - 7131685
Alignment:
| Q |
148 |
gcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattagga |
247 |
Q |
| |
|
|||||| ||||||| ||||| || || |||||||||| | |||| | |||||||| ||||| || | |||||||||| || |||| |||||||| |
|
|
| T |
7131872 |
gcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaac |
7131773 |
T |
|
| Q |
248 |
atttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||| ||| |||||||||||||| || | |||||| |||||||||||||||||| |||| |
|
|
| T |
7131772 |
atttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatac |
7131685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 330
Target Start/End: Complemental strand, 6426824 - 6426566
Alignment:
| Q |
72 |
tggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcag |
171 |
Q |
| |
|
||||||| | |||||||| |||||||||||| ||| | ||||||||||||| |||||||| |||||| ||| ||||||||||||||| ||||| ||| |
|
|
| T |
6426824 |
tggtgtataccctcaattgaagtctctctatctgggtagaaattcatggttaagtgatgaaatcatcataatgtatgcttccattttccccaatttacag |
6426725 |
T |
|
| Q |
172 |
ctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaa |
271 |
Q |
| |
|
|| |||||||||| ||||| | ||||| ||||| || | ||||||||| | ||||||||| ||| |||||||| |||| | |||||||| |
|
|
| T |
6426724 |
ctacttgatttgaaggtttgccgtgaaatatctgaaggtatttgtgaagttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaa |
6426625 |
T |
|
| Q |
272 |
cagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtca |
330 |
Q |
| |
|
||||| ||| ||||||||||||| ||| ||| |||| ||||||||||| |||||| |
|
|
| T |
6426624 |
acgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtca |
6426566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 335
Target Start/End: Complemental strand, 6416281 - 6416016
Alignment:
| Q |
70 |
tttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgc |
169 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| | ||| |||||||| |||||| | ||||| ||| || |||||| ||||| ||||||| |
|
|
| T |
6416281 |
tttggtgtataccctcaattaaagtctctctatttgggaaaaaataaatggttaagcgatgaaggtatcataatgttttcttccaacttccccaatttgc |
6416182 |
T |
|
| Q |
170 |
agctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttc |
269 |
Q |
| |
|
||||||||||||||| |||| | | |||| ||||| || | ||||||||||| | |||||||||||| || |||||||| |||||| ||| |
|
|
| T |
6416181 |
agctgcttgatttgaatcgttgtaatctcttatctgaaggtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaa |
6416082 |
T |
|
| Q |
270 |
aacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
|| |||||| ||| ||||||| ||||| ||| ||| | || |||||||||||||||||| |||| |
|
|
| T |
6416081 |
aaaagtgaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatac |
6416016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 6432464 - 6432363
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||||||||| ||||||| ||||| ||| |||||||||||||||| |||||||| | ||||||| |
|
|
| T |
6432464 |
cctcagttaaagtctctctatttgggtcacaattcatggttaaggaatgaaaggatcataatgtttgcttccattttccccaatttgcaacatcttgatt |
6432365 |
T |
|
| Q |
182 |
tg |
183 |
Q |
| |
|
|| |
|
|
| T |
6432364 |
tg |
6432363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 335
Target Start/End: Original strand, 10579532 - 10579785
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||| |||| |||||||| || || ||| | |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
10579532 |
cctcaattaaaatctctctatttgggtagaaattcattgttacgtgatgaaatgattataatgttagcttcctttttccccaatttgcagctgcttgatt |
10579631 |
T |
|
| Q |
182 |
tgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacct |
281 |
Q |
| |
|
||| | |||| || ||||||| ||||| || ||||||| | ||| ||| ||||||||| | |||||||| ||||| | ||| ||| |||||| | |
|
|
| T |
10579632 |
tgaatacttgcgaatacatatctgaaggtatttttcaagtttcaggaagatgtggtaagattaagcatttgaacttagccaaatgtccaagagtgaagcg |
10579731 |
T |
|
| Q |
282 |
aattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
| || |||| || || | | |||||||| ||||||||||||||||||||||| |
|
|
| T |
10579732 |
acttagaataaagattgtaattccccagctggaggtgttgaacttgtcatatac |
10579785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 8913783 - 8913881
Alignment:
| Q |
84 |
tcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgattt |
182 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||||||| ||||||| |||||| ||| ||||||||||||| | |||||||| |||||||||| |
|
|
| T |
8913783 |
tcaattaaagtctctttatttgggtgacaatttgtggttaacggatgaaatcatcataatgtttgcttccattttttccaatttgcatatgcttgattt |
8913881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 184
Target Start/End: Original strand, 6602957 - 6603103
Alignment:
| Q |
38 |
agaatgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcat |
137 |
Q |
| |
|
|||||||||| ||| ||||||| |||||| ||||| || | ||||||||||||||||||||||| | |||||||| |||||||| || | ||| || |
|
|
| T |
6602957 |
agaatgtagagaataatgattctatgatggatattggtatataccctcaattaaagtctctctatttaggtgacaatttatggttaagtgttcaaaaaat |
6603056 |
T |
|
| Q |
138 |
cattatgattgcttccattttccctaatttgcagctgcttgatttga |
184 |
Q |
| |
|
||| ||| ||||||| | |||| | ||||||||| |||||||||| |
|
|
| T |
6603057 |
cataatgtttgcttcttctatccccagtttgcagctacttgatttga |
6603103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 335
Target Start/End: Original strand, 7994128 - 7994231
Alignment:
| Q |
232 |
tgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcat |
331 |
Q |
| |
|
||||||||||| ||| |||||||| ||||| | ||| ||| |||||| ||| | |||||||||||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
7994128 |
tgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaa |
7994227 |
T |
|
| Q |
332 |
atac |
335 |
Q |
| |
|
|||| |
|
|
| T |
7994228 |
atac |
7994231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 9411594 - 9411555
Alignment:
| Q |
146 |
ttgcttccattttccctaatttgcagctgcttgatttgag |
185 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9411594 |
ttgcttccattttccccaatttgcagctgcttgatttgag |
9411555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 335
Target Start/End: Complemental strand, 6403028 - 6402910
Alignment:
| Q |
217 |
caagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagagg |
316 |
Q |
| |
|
|||||||||| || |||||||| |||||| |||||||| || | ||||||| |||||| ||| ||||||| |||||| ||| ||||| ||||| | |
|
|
| T |
6403028 |
caagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaag |
6402929 |
T |
|
| Q |
317 |
tgttgaacttgtcatatac |
335 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
6402928 |
tgttgaacttgtcagatac |
6402910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 335
Target Start/End: Complemental strand, 19632750 - 19632489
Alignment:
| Q |
71 |
ttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgca |
170 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| | |||| | |||||| |||||||| || | ||| | ||||| |||| || |||||| | |
|
|
| T |
19632750 |
ttggtgtataccctcaattaaagtctctctatttgggtcgaaatttacggttaagtgatgaaaagattacaatgttcgcttcgttttttcccaatttgta |
19632651 |
T |
|
| Q |
171 |
gctgcttgatttgagaagttgccaaaacatatcgaaaggtgttggccaagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttca |
270 |
Q |
| |
|
|| ||||||||||| ||||| | ||||||| || | | || | |||||||||| | ||||||||||| | | |||||||| || | |||||| |
|
|
| T |
19632650 |
gcggcttgatttgaatcgttgctattacatatctaatgctatttgtcaagttttaaga---tgttgtaagataacgcatttgaacttaactcgatgttca |
19632554 |
T |
|
| Q |
271 |
acagtgaacctaattggaatgaactttagagtcccccagctagaggtgttgaacttgtcatatac |
335 |
Q |
| |
|
| ||| |||||| ||||||| |||||| ||| ||| |||||||||||||| ||||||| ||||| |
|
|
| T |
19632553 |
atagttaacctacttggaataaactttctagttcccaagctagaggtgttggacttgtcgtatac |
19632489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 6403229 - 6403162
Alignment:
| Q |
37 |
aagaatgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctctattt |
104 |
Q |
| |
|
|||| |||||| ||||||||||||| || ||| |||||||| | ||||| ||||||||||||||||| |
|
|
| T |
6403229 |
aagagtgtagagaattctgattctttgacggatattggtgtataccctcagttaaagtctctctattt |
6403162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 182
Target Start/End: Original strand, 17636148 - 17636290
Alignment:
| Q |
40 |
aatgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatca |
139 |
Q |
| |
|
|||||||| |||||| ||||||||||| | |||| |||| | |||||||| ||||||||| ||||| || ||||||||||||||| ||||||||| ||| |
|
|
| T |
17636148 |
aatgtagagaattctaattcttcgatgaattttgttgtaaaccctcaatttaagtctctccatttgccttacaattcatggttaagagatgaaagcctca |
17636247 |
T |
|
| Q |
140 |
ttatgattgcttccattttccctaatttgcagctgcttgattt |
182 |
Q |
| |
|
| | | | | | |||||||||| |||||||||||||||||||| |
|
|
| T |
17636248 |
taaagctcgataccattttccccaatttgcagctgcttgattt |
17636290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 17627852 - 17627952
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| | || ||||||| ||||| ||| |||||||||||||||| |||||||| |||||||||| |
|
|
| T |
17627852 |
cctcaattaaaatctctctatttggctttcaattcattgctatgcgatgaaaacatcaaaatgtttgcttccattttccccaatttgcaactgcttgatt |
17627951 |
T |
|
| Q |
182 |
t |
182 |
Q |
| |
|
| |
|
|
| T |
17627952 |
t |
17627952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 32151575 - 32151483
Alignment:
| Q |
111 |
caattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatttgagaagttgccaaaacatatc |
203 |
Q |
| |
|
|||||||||||||| |||| | ||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
32151575 |
caattcatggttaacatatgataacatcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatc |
32151483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 18315066 - 18315169
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||| || |||||||||| || || ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
18315066 |
cctcaattaaagtctctccgttttacttgcaattcatggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttgatt |
18315165 |
T |
|
| Q |
182 |
tgag |
185 |
Q |
| |
|
|||| |
|
|
| T |
18315166 |
tgag |
18315169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 28525367 - 28525213
Alignment:
| Q |
29 |
ttgggggtaagaatgtagataattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatga |
128 |
Q |
| |
|
|||||||||||| || ||| || | |||||||| || | | |||||| |||| |||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
28525367 |
ttgggggtaagagtgaagaaaactatgattctttgacgaagtttggtctacatcctcaattaaagtctctcaatttgtgtgacaattcatggttaaggga |
28525268 |
T |
|
| Q |
129 |
tgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatttg |
183 |
Q |
| |
|
|||| ||||| | | ||||||||||||||| |||||| || ||||| ||||| |
|
|
| T |
28525267 |
cgaaaatatcataaggtttgcttccattttccacaatttggaggtgcttaatttg |
28525213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 41889367 - 41889450
Alignment:
| Q |
102 |
tttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatttgag |
185 |
Q |
| |
|
||||||| | ||| |||||||| |||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41889367 |
tttggctcaaaatccatggttatcagatgaagacatcataatgtttgcttccattttccctaatttgcagctacttgatttgag |
41889450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 41901331 - 41901434
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
||||||||||||| ||| |||||| ||||| | |||||| ||||||| ||||| ||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
41901331 |
cctcaattaaagtatcttcgattggctcacaatccgtggttatttgatgaagacatcacaatgttcgcttccattttccccaatttgcagctgcttgatt |
41901430 |
T |
|
| Q |
182 |
tgag |
185 |
Q |
| |
|
|||| |
|
|
| T |
41901431 |
tgag |
41901434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 32267778 - 32267675
Alignment:
| Q |
82 |
cctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattgcttccattttccctaatttgcagctgcttgatt |
181 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||| ||||| || ||||||| |||| ||| |||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
32267778 |
cctcaattaaagtatcttcgtttggctcacaatccatggctatttgatgaatatatcaccatgcttgcttccatcttctccaatttgcagctgcttgatt |
32267679 |
T |
|
| Q |
182 |
tgag |
185 |
Q |
| |
|
|||| |
|
|
| T |
32267678 |
tgag |
32267675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 32785535 - 32785671
Alignment:
| Q |
49 |
aattctgattcttcgatggaatttggtgtacagcctcaattaaagtctctctatttggctgacaattcatggttaaatgatgaaagcatcattatgattg |
148 |
Q |
| |
|
|||||| |||||| |||||| |||| |||| ||||||||||||| |||| |||||||| ||||| ||||||| ||||||||||||| ||| || |
|
|
| T |
32785535 |
aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgtttt |
32785634 |
T |
|
| Q |
149 |
cttccattttccctaatttgcagctgcttgatttgag |
185 |
Q |
| |
|
|||| ||||| | |||||||| || ||||||||||| |
|
|
| T |
32785635 |
cttctattttttccaatttgcaactacttgatttgag |
32785671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 1395 - 1513
Alignment:
| Q |
217 |
caagttttaaaaagttgttgtaagattaggaatttgaacctagcctactgttcaacagtgaacctaattggaatgaactttagagtcccccagctagagg |
316 |
Q |
| |
|
|||||||||| || |||| ||||||||| |||||||| |||||| |||||| | ||| ||||| ||| |||||||||| ||| || ||||||||| |
|
|
| T |
1395 |
caagttttaaggagatgttataagattagacatttgaacttagcctggtgttcatctgtggacctatttgaaatgaactttgtagttcctaagctagagg |
1494 |
T |
|
| Q |
317 |
tgttgaacttgtcatatac |
335 |
Q |
| |
|
||||| |||||||| |||| |
|
|
| T |
1495 |
tgttggacttgtcaaatac |
1513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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