View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_low_19 (Length: 278)
Name: NF13805_low_19
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 43322294 - 43322548
Alignment:
| Q |
18 |
gtcattttagagaacaaaaaagaatatgttaaacaaacttaacctcgtgtatatttgacaaaagaaaaacttaacctcgtactttttcttgaggtacatt |
117 |
Q |
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| T |
43322294 |
gtcattttagagaacaaaaaagaatatgttaaacaaacttaacctcgtgtatatttgacaaaagaaaaacttaacctcgtactttttcttgaggtacatt |
43322393 |
T |
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| Q |
118 |
agtggtcccatttcagcct-ccggtg--attgggaattaaccacttttgatcgtcaaggcatttgcccgtgcgtggggttggttttgccgacaacggtac |
214 |
Q |
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||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43322394 |
agtggtcccatttcagccttccggtgccattaggaattaaccacttttgatcgtcaaggcatttgcccgtgcgtggggttggttttgccgacaacggtac |
43322493 |
T |
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| Q |
215 |
actaagaccgtaaactaccaccaaatattctcgtttggtctgtcccttactctgt |
269 |
Q |
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| T |
43322494 |
actaagaccgtaaactaccaccaaatattctcgtttggtctgtcccttactctgt |
43322548 |
T |
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