View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_low_2 (Length: 545)
Name: NF13805_low_2
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Complemental strand, 42275522 - 42275007
Alignment:
| Q |
11 |
catcatcactccccatcaacgctccaattcagaacctcaacaggttcattataaattttagttaccttaactcattgataaattcatatattttgtcaca |
110 |
Q |
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| T |
42275522 |
catcatcactccccatcaacgctccaattcagaacctcaacaggttcattataaattttagttaccttaactcattgataaattcatatattttgtcaca |
42275423 |
T |
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| Q |
111 |
ctaaataaaccaaccagtcacaaactcatttagtgaaaaatttcaaaacaaatttgactataatcatacattaaattggtcattttaagattagtgacgt |
210 |
Q |
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| T |
42275422 |
ctaaataaacca----gtcacaaactcatttagtgaaaaaattcaaaacaaatttgactataatcatacattaaattggtcattttaagattagtgacgt |
42275327 |
T |
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| Q |
211 |
tgtttgtgacatatttttgcttgtaggtgcatatttcattggtggggaaagataagatgagagtgtcatggataacggaagacaaggaaacagtaactat |
310 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42275326 |
tgtttgtgacatttttttgcttgtaggtgcatatttcattggtggggaaagataagatgagagtgtcatggataacggaagacaaggaaacagaaactat |
42275227 |
T |
|
| Q |
311 |
ggttgagtatggaaccaaagcaggggagtatagtgaaaaaacaatnnnnnnncatacatcgtaccaatattttttctacaattctggaaaaatacacaat |
410 |
Q |
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| T |
42275226 |
ggttgagtatggaaccaaagcaggggagtatagtgaaaaaacaatgggggagcatacatcgtaccaatattttttctacaattctggaaaaatacacaat |
42275127 |
T |
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| Q |
411 |
gctgtgattgggcctttggagccaaacacaacttacttctacaggtgtggaggtttgggtcctgagttttccttcaagacaccaccctctaagtttccta |
510 |
Q |
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| T |
42275126 |
gctgtgattggacctttggagccaaacacaacttacttctacaggtgtggaggtttgggtcctgagttttccttcaagacaccaccctctaagtttccta |
42275027 |
T |
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| Q |
511 |
ttgaatttgtcattgttggt |
530 |
Q |
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| T |
42275026 |
ttgaatttgtcattgttggt |
42275007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 532
Target Start/End: Original strand, 26275598 - 26275698
Alignment:
| Q |
432 |
ccaaacacaacttacttctacaggtgtggaggtttgggtcctgagttttccttcaagacaccacc-ctctaagtttcctattgaatttgtcattgttggt |
530 |
Q |
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|||| ||| |||||||||||||| |||||||| | |||||||||||||| ||||||||||| || ||| ||||| |||||||||||||| ||||| ||| |
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| T |
26275598 |
ccaagcactacttacttctacagatgtggaggatcaggtcctgagttttctttcaagacacctccactc-aagttgcctattgaatttgtgattgtgggt |
26275696 |
T |
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| Q |
531 |
ga |
532 |
Q |
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|| |
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| T |
26275697 |
ga |
26275698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 26275401 - 26275458
Alignment:
| Q |
235 |
aggtgcatatttcattggtggggaaagataagatgagagtgtcatggataacggaaga |
292 |
Q |
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||||||| ||||| ||||| ||||||||| | |||||||| ||||||||||| ||||| |
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| T |
26275401 |
aggtgcacatttcgttggtagggaaagatcatatgagagtatcatggataactgaaga |
26275458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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