View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_low_24 (Length: 225)
Name: NF13805_low_24
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 352998 - 352804
Alignment:
| Q |
18 |
atttcatctcttggattgtccaatgtgcctcttcaagcggcggatattgcaccatccatgaataagtatgttaaacgtgtgggcgtttggagcaacataa |
117 |
Q |
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| T |
352998 |
atttcatctcttggattgtccaatgtgcctcttcaagcggcggatattgcaccatccatgaataagtatgttaaatgtgtgggcgtttggagcaacataa |
352899 |
T |
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| Q |
118 |
tgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacacattcatggattctgtattcttctc |
212 |
Q |
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| T |
352898 |
tgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacacattcatggattctgtattcttctc |
352804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 10579778 - 10579584
Alignment:
| Q |
19 |
tttcatctcttggattgtccaatgtgcctcttcaag-cggcggatattgcaccatccatgaataagtatgttaaacgtgtgggcgtttggagcaacataa |
117 |
Q |
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| T |
10579778 |
tttcatctcttggattgtccaatgtgcctcttcaacacgtcggatattacaccatccatgaataagtatgttaaacgtgtgagcatttggagcaatgtaa |
10579679 |
T |
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| Q |
118 |
tgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacacattcatggattctgtattcttctc |
212 |
Q |
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| T |
10579678 |
tgcttcagctccaagtaaatttcacgagcttgttcaacaaatttctctttacatagagtatcaagcaacacattcatggattctgtattcttctc |
10579584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 24578185 - 24577991
Alignment:
| Q |
19 |
tttcatctcttggattgtccaatgtgcctcttcaa-gcggcggatattgcaccatccatgaataagtatgttaaacgtgtgggcgtttggagcaacataa |
117 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
24578185 |
tttcatctcttggattgtccaatgtgcctcttcaacgcgtcggatattgcaccatccatgaataagtatgttaaacgtgtgagcgtttggagcaatgtaa |
24578086 |
T |
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| Q |
118 |
tgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttctctttgcaaagagtatcaagcaacacattcatggattctgtattcttctc |
212 |
Q |
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| T |
24578085 |
tgcttcagctccaagtaaatttcgcgagcttgttcaacaaatttttctttgcaaagagtatcaagcaacacattcatggattctgtattcttctc |
24577991 |
T |
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