View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_low_4 (Length: 477)
Name: NF13805_low_4
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 48729939 - 48730385
Alignment:
| Q |
19 |
tcaagaacatgaaactgcttatatttcacagcaatatgcagagcagtctcacttcgaactgtaacatcttcaatacaacctggacaaacagacaggaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48729939 |
tcaagaacatgaaactgcttatatttcacagcaatatgcagagcagtctcacttcgaactgtaacatcttcaatacaacctggacaaacaaacaggaatt |
48730038 |
T |
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| Q |
119 |
ttactacaagatcaaagtttccagtttgagtagcaatatgcaatggagttagaccctctatccctttgactcggacaagatctttattaatatctacaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
48730039 |
ttactacaagatcaaagtttccagtttgagtagcaatatgcaatggagttagaccctctctccctttgactcggacaaggtctttattaatatctacaaa |
48730138 |
T |
|
| Q |
219 |
gcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48730139 |
gcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcata |
48730238 |
T |
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| Q |
319 |
atctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagatgtaaggatcca |
418 |
Q |
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| T |
48730239 |
atctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaattatagcgttctaagatgtaaggatcga |
48730338 |
T |
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| Q |
419 |
tttgaatcagtttgtatagcaagtctatatctcccatctgtgctgct |
465 |
Q |
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| T |
48730339 |
tttgaatcagtttgaatagcaagtctatatctcccatttgtgctgct |
48730385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 391
Target Start/End: Complemental strand, 4819091 - 4818941
Alignment:
| Q |
241 |
ttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtat |
340 |
Q |
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| T |
4819091 |
ttgttttgcatagcaagatggataggactgaatccttgttgatttagcttccaagcaaatgaaggttttaacttcataatctcggaggcaaattggagat |
4818992 |
T |
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| Q |
341 |
gtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
391 |
Q |
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| || || ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4818991 |
gacccatagatgcagcaatatgcaaaggagtttcaacaaatggtattaaat |
4818941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 391
Target Start/End: Original strand, 31040743 - 31040851
Alignment:
| Q |
283 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatg |
382 |
Q |
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||||| ||||| |||||||||||||| | ||||||||| ||||||||||| |||||| || |||||| ||||||| |||||| |||||||||| |
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| T |
31040743 |
tttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgaacatgtcccatagatgcagctatatgcagaggagtttcaacaaatg |
31040842 |
T |
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| Q |
383 |
gtattaaat |
391 |
Q |
| |
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| ||||||| |
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| T |
31040843 |
gaattaaat |
31040851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 31075952 - 31076001
Alignment:
| Q |
283 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
332 |
Q |
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||||| ||| |||||||||||||||| | ||||||||| ||||||||||| |
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| T |
31075952 |
tttagcttcaaagcaaatgaaggtttcaatctcataatttcagtggcaaa |
31076001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 28865196 - 28865156
Alignment:
| Q |
351 |
tgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
391 |
Q |
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| T |
28865196 |
tgcagcgatatgtaaaggagtttcaacaaatggtattaaat |
28865156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 30648044 - 30648008
Alignment:
| Q |
351 |
tgcagcaatatgcaaaggagtatcaacaaatggtatt |
387 |
Q |
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|||||||||||| |||||||| ||||||||||||||| |
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| T |
30648044 |
tgcagcaatatgtaaaggagtttcaacaaatggtatt |
30648008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 26087519 - 26087599
Alignment:
| Q |
252 |
agcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
332 |
Q |
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| T |
26087519 |
agcaagatggatgggactgaatccttgctgatttagtttccaagcatatgaaggtttcaaattcataatttcagtggcaaa |
26087599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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