View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13805_low_6 (Length: 461)
Name: NF13805_low_6
Description: NF13805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13805_low_6 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 68 - 461
Target Start/End: Complemental strand, 56392807 - 56392416
Alignment:
| Q |
68 |
ttttacccaactcactgtcttttacagaatatacataccaaggagaagattggcagtggtagagaaagtgaaggactgtattatcttgaaaatgtttcac |
167 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56392807 |
ttttatccaactcattgtcttttacagaatatacataccaaggagaagattggcagtggtagagaaagtgaaggactgtattatcttgaaaatgtttcac |
56392708 |
T |
|
| Q |
168 |
aacaaacccataatggaacattggctcatcttgcaagtgatcacatacaagataaaaataaaaaggaaatttggctatcgcatagacgattaggacatcc |
267 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
56392707 |
aacaaacccataatggagcattggctcatcttgcaagtgatcacatacaagataaaaataaaaaggaaatttggctatggcatagacgatcaggacatct |
56392608 |
T |
|
| Q |
268 |
ttcttttagttatctaaagaaattatttccatcgttatttcataaatgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagtcatcgt |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
56392607 |
ttcttttagttatctaaagaaattatttccatcgttatttcataaatgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagccatcgt |
56392508 |
T |
|
| Q |
368 |
gctgtttatcctttaagcaatnnnnnnnnnccgattttccttttttgttagtacatactgatgtttggggccctgccccacaatctacgcataa |
461 |
Q |
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|||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56392507 |
gctgtttatcctttaaccaat--aaaaaaactgattttcctttttcgttagtacatactgatgtttggggccctgccccacaatctacgcataa |
56392416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 56392415 - 56392361
Alignment:
| Q |
1 |
tgggaaaaaatgttttatcagtgttgttgatgattgtactcgagtaacttgggta |
55 |
Q |
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| T |
56392415 |
tgggaaaaaatggtttatcagttttgttgatgattgtactcgggtaacttgggta |
56392361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 68 - 461
Target Start/End: Complemental strand, 27517048 - 27516657
Alignment:
| Q |
68 |
ttttacccaactcactgtcttttacagaatatacataccaaggagaagattggcagtggtagagaaagtgaaggactgtattatcttgaaaatgtttcac |
167 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27517048 |
ttttatccaactcattgtcttttacagaatatacataccaaggagaagattggcagttgtagagaaagtgaaggactgtattatcttgaaaatgtttcac |
27516949 |
T |
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| Q |
168 |
aacaaacccataatggaacattggctcatcttgcaagtgatcacatacaagataaaaataaaaaggaaatttggctatcgcatagacgattaggacatcc |
267 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
27516948 |
aacaaacccataatggagcattggctcatcttgcaagtgatcacatacaagataaaaataaaaaggaaatttggctatggcatagacgattagggcatcc |
27516849 |
T |
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| Q |
268 |
ttcttttagttatctaaagaaattatttccatcgttatttcataaatgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagtcatcgt |
367 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27516848 |
ttcttttagttatctaaataaattatttccatcgttatttcataaatgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagccatcgt |
27516749 |
T |
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| Q |
368 |
gctgtttatcctttaagcaatnnnnnnnnnccgattttccttttttgttagtacatactgatgtttggggccctgccccacaatctacgcataa |
461 |
Q |
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|||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516748 |
tttgtttatcctttaatcaat--aaaaaaactgattttcctttttcgttagtacatactgatgtttggggccctgccccacaatctacgcataa |
27516657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27516656 - 27516602
Alignment:
| Q |
1 |
tgggaaaaaatgttttatcagtgttgttgatgattgtactcgagtaacttgggta |
55 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
27516656 |
tgggaaaaaatggtttatcagttttgttgatgattgtactcgggtaacttgggta |
27516602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 68 - 253
Target Start/End: Complemental strand, 40456756 - 40456571
Alignment:
| Q |
68 |
ttttacccaactcactgtcttttacagaatatacataccaaggagaagattggcagtggtagagaaagtgaaggactgtattatcttgaaaatgtttcac |
167 |
Q |
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||||| ||||| || ||| |||| ||||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||| |
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| T |
40456756 |
ttttatccaacccattgtttttttcagaacatacataccaaggagaagattggcagtggtagacgcagtggagggttgtattatcttgaaaatgtctcac |
40456657 |
T |
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| Q |
168 |
aacaaacccataatggaacattggctcatcttgcaagtgatcacatacaagataaaaataaaaaggaaatttggctatcgcataga |
253 |
Q |
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||||||| ||||| ||| |||||||||||||||| ||||| | || |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
40456656 |
aacaaactcataaaggagcattggctcatcttgcgagtgacctcacacaagataaaaataaaaaggaaatttggttatggcataga |
40456571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 282 - 461
Target Start/End: Complemental strand, 40456564 - 40456388
Alignment:
| Q |
282 |
taaagaaattatttccatcgttatttcataaatgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagtcatcgtgctgtttatccttt |
381 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| || |
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| T |
40456564 |
taaagaaattgtttccatcgttatttcataaatgcaatatttcagattttctttgtgaaacttgtgt-atggcaaaaagtcatcgtgttgtttttccctt |
40456466 |
T |
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| Q |
382 |
aagcaatnnnnnnnnnccgattttccttttttgttagtacatactgatgtttggggccctgccccacaatctacgcataa |
461 |
Q |
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||||||| | | ||||||||||| |||||||| || ||||||||||||||| |||| || ||||| ||||| |
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| T |
40456465 |
aagcaat--aaaaaatctgtttttcctttttcattagtacacacagatgtttggggcccttccccgcagtctacacataa |
40456388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 40456381 - 40456332
Alignment:
| Q |
6 |
aaaaatgttttatcagtgttgttgatgattgtactcgagtaacttgggta |
55 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
40456381 |
aaaaatggtttatcagttttgttgatgattgtactcgggtaacttgggta |
40456332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 40089579 - 40089649
Alignment:
| Q |
87 |
ttttacagaatatacataccaaggagaagattggcagtggtagagaaagtgaaggactgtattatcttgaa |
157 |
Q |
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|||| |||||| | ||||| |||||||||||||||||||||| | |||| |||||| | || ||||||||| |
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| T |
40089579 |
ttttgcagaatgttcatacaaaggagaagattggcagtggtaaaaaaagagaaggattatactatcttgaa |
40089649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 40089827 - 40089860
Alignment:
| Q |
335 |
tgtgaaacttgtgtaatggcaaaaagtcatcgtg |
368 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
40089827 |
tgtgaaacttgtgtaatggcaaaaagccatcgtg |
40089860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 12459938 - 12460008
Alignment:
| Q |
87 |
ttttacagaatatacataccaaggagaagattggcagtggtagagaaagtgaaggactgtattatcttgaa |
157 |
Q |
| |
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|||| |||||| | ||||| |||||||||||||||||||||| | |||| |||||| | || ||||||||| |
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| T |
12459938 |
ttttgcagaatgttcatacaaaggagaagattggcagtggtaaaaaaagagaaggattatactatcttgaa |
12460008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 4243139 - 4243209
Alignment:
| Q |
87 |
ttttacagaatatacataccaaggagaagattggcagtggtagagaaagtgaaggactgtattatcttgaa |
157 |
Q |
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|||| |||||| | ||||| |||||||||||||||||||||| | |||| |||||| | || ||||||||| |
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| T |
4243139 |
ttttgcagaatgttcatacaaaggagaagattggcagtggtaaaaaaagagaaggattatactatcttgaa |
4243209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 4243387 - 4243420
Alignment:
| Q |
335 |
tgtgaaacttgtgtaatggcaaaaagtcatcgtg |
368 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
4243387 |
tgtgaaacttgtgtaatggcaaaaagccatcgtg |
4243420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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