View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13806_high_1 (Length: 597)
Name: NF13806_high_1
Description: NF13806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13806_high_1 |
 | |
|
| [»] scaffold0971 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 539; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 2 - 560
Target Start/End: Complemental strand, 40552027 - 40551469
Alignment:
| Q |
2 |
tatttatcttttcctagggcaatttttaaactaaattatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagttcagtggtatta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40552027 |
tatttatcttttcctagggcaatttttaaactaaattatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagttctgtggtatta |
40551928 |
T |
|
| Q |
102 |
ttgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattcatgtct |
201 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40551927 |
ttgttttcagttgtttagatcactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattcatatct |
40551828 |
T |
|
| Q |
202 |
ttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcactgagttttctatttcgagtatttttctaaccactatc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40551827 |
ttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcaccgagttttctatttcgagtatttttctaaccactatc |
40551728 |
T |
|
| Q |
302 |
ttgatttcagattcatttccgcagcagttgcatcaactttcgagacaacaagttgctattcgaccattcttggtttctggttcttcttccggtgagcctc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40551727 |
ttgatttcagattcatttccgcagcagttgcatcaactttcgagacaacaagttgctattcgaccattcttggtttctggttcttcttccggtgagcctc |
40551628 |
T |
|
| Q |
402 |
cttcgaccagtttgccaagtccctccattgctcctaactcgcaacatatgttaccacctggttacaatatgtcaagaactttatccggtgtctctggaag |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40551627 |
cttcgaccagtttgccaagtccctccattgctcctaactcgcaacatatgttaccacctggttacaatatgtcaagaactttctccggtgtctctggaag |
40551528 |
T |
|
| Q |
502 |
accacctctaataaacaccactaggtcttcaattgcccaagatattcaaggtgttgagt |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40551527 |
accacctctaataaacaccactaggtcttcaattgcccaagatattcaaggtgttgagt |
40551469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 190 - 597
Target Start/End: Complemental strand, 40569059 - 40568653
Alignment:
| Q |
190 |
gcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtagcactgagttttctatttcgagtattttt |
289 |
Q |
| |
|
||||||||||||| ||||| |||||||| | |||||||||||| |||||||| | ||||| |||| ||||||||||||||| |||| ||||||| |
|
|
| T |
40569059 |
gcattcatgtctt-gtttactaattctattcagcagcaggcatacatatcactaattgtggatgacttgcagcactgagttttctgtttcacatattttt |
40568961 |
T |
|
| Q |
290 |
ctaaccactatcttgatttcagattcatttccgcagcagttgcatcaactttcgagacaacaagttgctattcgaccattcttggtttctggttcttctt |
389 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
40568960 |
ctaaccactatcttgatttcagattcacttccacagcatttgcatcaactttcgagacaacaagctgctactcgtccattcttggtttctggttcttctt |
40568861 |
T |
|
| Q |
390 |
ccggtgagcctccttcgaccagtttgccaagtccctccattgctcctaactcgcaacatatgttaccacctggttacaatatgtcaagaactttatccgg |
489 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||||||||||||||||||||| || || ||| |||||||||||||||||||||| ||||||| ||| | |
|
|
| T |
40568860 |
ccggtgagtctcctgtgaccagtctgccaagtccctccattgctcctaactcacagcacatgctaccacctggttacaatatgtcgggaactttctccag |
40568761 |
T |
|
| Q |
490 |
tgtctctggaagaccacctctaataaacaccactaggtcttcaattgcccaagatattcaaggtgttgagttacgcgcaccagcaccacatctccgttct |
589 |
Q |
| |
|
|| ||||| ||||||||| || |||||||| ||||||||||||||||||| |||||||||||||| |||| |||| || || || |||||||||| |||| |
|
|
| T |
40568760 |
tgcctctgcaagaccacccctcataaacactactaggtcttcaattgcccgagatattcaaggtggtgagatacgtgcccctgctccacatctccattct |
40568661 |
T |
|
| Q |
590 |
tctagacc |
597 |
Q |
| |
|
|||||||| |
|
|
| T |
40568660 |
tctagacc |
40568653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 40569173 - 40569110
Alignment:
| Q |
25 |
ttttaaactaaattatacgtgtgcagtttttgaaaaattaatcatatacggattgtttcagtagtt |
90 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
40569173 |
ttttaaactaaattata--tatgcagtttttgaaaaattagtcatataccgactgtttcagtagtt |
40569110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 62 - 387
Target Start/End: Complemental strand, 15110539 - 15110216
Alignment:
| Q |
62 |
ttaatcatatacggattgtttcagtagttcagtggtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatactta |
161 |
Q |
| |
|
||||| ||||||||||||||| | ||||| |||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||||||| |||||| |
|
|
| T |
15110539 |
ttaattatatacggattgttttaatagttttgtggtattattgtttttggttgttcggattactctaaaattgggatagggtgacaaatttacgtactta |
15110440 |
T |
|
| Q |
162 |
aatctgtactcttatgcatggttatttcgcattcatgtctttgtttatgtattctatttattagcaggcatacaaatcactaaatatggatagcttgtag |
261 |
Q |
| |
|
|| ||||||||||||| || |||||| |||||| || | |||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
15110439 |
catttgtactcttatgcgtgaatatttcatattcatctcgtcgtttatgtattctattcaatagcagccatacaaatcactaaatatggatggcttgtag |
15110340 |
T |
|
| Q |
262 |
cactgagttttctatttcgagtatttttctaaccactatcttgatttcagattcatttccgcagcagttgcatcaactttcgagacaacaagttgctatt |
361 |
Q |
| |
|
||| ||||| ||||| | |||| |||| ||||| ||||||||| ||| ||| || || | ||||| ||| ||| ||| |||||| | ||||||| | |
|
|
| T |
15110339 |
caccgagttgtctatcttgagtgttttcctaacgactatcttgttttaagactc--ttgcatgacagttacattaaccttcaagacaatatgttgctact |
15110242 |
T |
|
| Q |
362 |
cgaccattcttggtttctggttcttc |
387 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
15110241 |
cgaccattcttggtttttggttcttc |
15110216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 231 - 383
Target Start/End: Original strand, 15110059 - 15110211
Alignment:
| Q |
231 |
atacaaatcactaaatatggatagcttgtagcactgagttttctatttcgagtatttttctaaccactatcttgatttcagattcatttccgcagcagtt |
330 |
Q |
| |
|
||||||||||||||||||| || ||| ||| ||||||||| || ||||| ||||||||||||| ||||||||||||||| |||| |||| || ||||| |
|
|
| T |
15110059 |
atacaaatcactaaatatgaatgacttatagaactgagtttcctgtttcgcgtatttttctaacgactatcttgatttcaaattctcttccacatcagtt |
15110158 |
T |
|
| Q |
331 |
gcatcaactttcgagacaacaagttgctattcgaccattcttggtttctggtt |
383 |
Q |
| |
|
|| ||| ||||| |||||||||||| ||| || ||| |||||||||| ||||| |
|
|
| T |
15110159 |
gcttcatctttcaagacaacaagtttctactcaacccttcttggtttgtggtt |
15110211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 15109895 - 15110018
Alignment:
| Q |
96 |
gtattattgttttcagttgtttagattactctaacattgggatagggcgacaaatttacatacttaaatctgtactcttatgcatggttatttcgcattc |
195 |
Q |
| |
|
||||| ||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| | | ||| |||||| ||||| |
|
|
| T |
15109895 |
gtattcttgtttttggttgtttggattactctaacattgggatagggtgacaaatttacgtacttaaatttgtactctaacgagtggatatttcacattc |
15109994 |
T |
|
| Q |
196 |
atgtctttgtttatgtattctatt |
219 |
Q |
| |
|
|| |||| |||||||||||||||| |
|
|
| T |
15109995 |
atctcttcgtttatgtattctatt |
15110018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0971 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0971
Description:
Target: scaffold0971; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 596
Target Start/End: Complemental strand, 2702 - 2645
Alignment:
| Q |
539 |
caagatattcaaggtgttgagttacgcgcaccagcaccacatctccgttcttctagac |
596 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||| ||||| |||| |||||||||||| |
|
|
| T |
2702 |
caagatattcgaggtgttgagttacgtgccccaacaccatatctatgttcttctagac |
2645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University