View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13806_low_2 (Length: 237)
Name: NF13806_low_2
Description: NF13806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13806_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 52423885 - 52423677
Alignment:
| Q |
13 |
acagaccaaaacaaaccaaaattggaacaagctaattagttcacaatgaggcaaaatcctaatcaatagaaacttggagaatgctaaaaagtccaatcaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52423885 |
acagaccaaaacaaaccaaaattggaacaagctaattagttcacaatgaggcaaaatcctaatcaatagaaacttggagaatgctaaaaagtccaatcaa |
52423786 |
T |
|
| Q |
113 |
acaaaggatcaatctcttgcaacttactcaaataagagttaatactcagcacggaaacaagacgaccaacaacattcaaagactctaaaacacaaatagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52423785 |
acaaaggatcaatctcttgcaacttactcaaataagagttaatactcagcacggaaacaagatgaccaacaacattcaaagactctaaaacacaaatagt |
52423686 |
T |
|
| Q |
213 |
cagagaaac |
221 |
Q |
| |
|
|| |||||| |
|
|
| T |
52423685 |
caaagaaac |
52423677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University